Strain Fitness in Variovorax sp. SCN45 around GFF3219

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3218 and GFF3219 are separated by 13 nucleotidesGFF3219 and GFF3220 are separated by 24 nucleotidesGFF3220 and GFF3221 are separated by 3 nucleotides GFF3218 - Phage tail fiber, at 37,690 to 38,703 GFF3218 GFF3219 - hypothetical protein, at 38,717 to 39,154 GFF3219 GFF3220 - no description, at 39,179 to 39,790 GFF3220 GFF3221 - hypothetical protein, at 39,794 to 43,843 GFF3221 Position (kb) 38 39 40Strain fitness (log2 ratio) -1 0 1 2at 37.808 kb on + strand, within GFF3218at 37.808 kb on + strand, within GFF3218at 37.808 kb on + strand, within GFF3218at 37.808 kb on + strand, within GFF3218at 37.809 kb on - strand, within GFF3218at 38.018 kb on + strand, within GFF3218at 38.018 kb on + strand, within GFF3218at 38.019 kb on - strand, within GFF3218at 38.019 kb on - strand, within GFF3218at 38.019 kb on - strand, within GFF3218at 38.111 kb on + strand, within GFF3218at 38.111 kb on + strand, within GFF3218at 38.111 kb on + strand, within GFF3218at 38.112 kb on - strand, within GFF3218at 38.125 kb on - strand, within GFF3218at 38.223 kb on - strand, within GFF3218at 38.255 kb on + strand, within GFF3218at 38.255 kb on + strand, within GFF3218at 38.255 kb on + strand, within GFF3218at 38.256 kb on - strand, within GFF3218at 38.256 kb on - strand, within GFF3218at 38.256 kb on - strand, within GFF3218at 38.262 kb on + strand, within GFF3218at 38.324 kb on + strand, within GFF3218at 38.567 kb on + strand, within GFF3218at 38.567 kb on + strand, within GFF3218at 38.567 kb on + strand, within GFF3218at 38.567 kb on + strand, within GFF3218at 38.568 kb on - strand, within GFF3218at 38.616 kb on - strandat 38.638 kb on + strandat 38.639 kb on - strandat 38.974 kb on - strand, within GFF3219at 38.974 kb on - strand, within GFF3219at 38.984 kb on + strand, within GFF3219at 38.985 kb on - strand, within GFF3219at 38.985 kb on - strand, within GFF3219at 38.985 kb on - strand, within GFF3219at 38.985 kb on - strand, within GFF3219at 38.985 kb on - strand, within GFF3219at 39.045 kb on + strand, within GFF3219at 39.045 kb on + strand, within GFF3219at 39.045 kb on + strand, within GFF3219at 39.045 kb on + strand, within GFF3219at 39.045 kb on + strand, within GFF3219at 39.046 kb on - strand, within GFF3219at 39.147 kb on + strandat 39.180 kb on + strandat 39.181 kb on - strandat 39.636 kb on + strand, within GFF3220at 39.771 kb on + strandat 39.816 kb on + strandat 40.117 kb on + strandat 40.117 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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37,808 + GFF3218 0.12 +0.3
37,808 + GFF3218 0.12 -0.2
37,808 + GFF3218 0.12 -0.1
37,808 + GFF3218 0.12 -0.3
37,809 - GFF3218 0.12 -0.5
38,018 + GFF3218 0.32 +0.1
38,018 + GFF3218 0.32 +0.2
38,019 - GFF3218 0.32 -0.5
38,019 - GFF3218 0.32 +0.2
38,019 - GFF3218 0.32 -0.9
38,111 + GFF3218 0.42 +0.0
38,111 + GFF3218 0.42 -0.8
38,111 + GFF3218 0.42 +0.9
38,112 - GFF3218 0.42 +1.9
38,125 - GFF3218 0.43 -0.3
38,223 - GFF3218 0.53 -1.6
38,255 + GFF3218 0.56 +0.2
38,255 + GFF3218 0.56 +0.9
38,255 + GFF3218 0.56 -1.0
38,256 - GFF3218 0.56 +0.9
38,256 - GFF3218 0.56 -0.1
38,256 - GFF3218 0.56 +0.0
38,262 + GFF3218 0.56 -0.7
38,324 + GFF3218 0.63 -0.1
38,567 + GFF3218 0.86 +0.1
38,567 + GFF3218 0.86 +0.5
38,567 + GFF3218 0.86 -0.1
38,567 + GFF3218 0.86 -0.6
38,568 - GFF3218 0.87 -0.1
38,616 - -0.2
38,638 + -0.8
38,639 - -0.6
38,974 - GFF3219 0.59 -0.8
38,974 - GFF3219 0.59 -0.5
38,984 + GFF3219 0.61 +0.9
38,985 - GFF3219 0.61 -0.1
38,985 - GFF3219 0.61 +0.7
38,985 - GFF3219 0.61 -0.1
38,985 - GFF3219 0.61 +0.9
38,985 - GFF3219 0.61 +0.1
39,045 + GFF3219 0.75 -0.0
39,045 + GFF3219 0.75 +1.2
39,045 + GFF3219 0.75 +0.2
39,045 + GFF3219 0.75 -0.1
39,045 + GFF3219 0.75 +0.9
39,046 - GFF3219 0.75 +0.7
39,147 + +0.4
39,180 + -0.7
39,181 - +0.7
39,636 + GFF3220 0.75 -1.1
39,771 + -0.1
39,816 + -0.1
40,117 + +0.3
40,117 + -0.6

Or see this region's nucleotide sequence