Strain Fitness in Variovorax sp. SCN45 around GFF3178

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3176 and GFF3177 are separated by 162 nucleotidesGFF3177 and GFF3178 are separated by 289 nucleotidesGFF3178 and GFF3179 are separated by 30 nucleotides GFF3176 - Two-component transcriptional response regulator, LuxR family, at 617,298 to 617,771 GFF3176 GFF3177 - hypothetical protein, at 617,934 to 618,158 GFF3177 GFF3178 - hypothetical protein, at 618,448 to 621,555 GFF3178 GFF3179 - hypothetical protein, at 621,586 to 622,590 GFF3179 Position (kb) 618 619 620 621 622Strain fitness (log2 ratio) -2 -1 0 1at 617.587 kb on + strand, within GFF3176at 617.588 kb on - strand, within GFF3176at 617.588 kb on - strand, within GFF3176at 617.794 kb on + strandat 617.809 kb on - strandat 617.869 kb on + strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.870 kb on - strandat 617.946 kb on + strandat 617.946 kb on + strandat 617.946 kb on + strandat 617.947 kb on - strandat 618.113 kb on + strand, within GFF3177at 618.178 kb on + strandat 618.179 kb on - strandat 618.207 kb on + strandat 618.208 kb on - strandat 618.208 kb on - strandat 618.208 kb on - strandat 618.261 kb on + strandat 618.262 kb on - strandat 618.285 kb on + strandat 618.300 kb on + strandat 618.316 kb on + strandat 618.329 kb on + strandat 618.335 kb on + strandat 618.335 kb on + strandat 618.335 kb on + strandat 618.405 kb on + strandat 618.991 kb on + strand, within GFF3178at 618.991 kb on + strand, within GFF3178at 618.992 kb on - strand, within GFF3178at 618.992 kb on - strand, within GFF3178at 619.093 kb on + strand, within GFF3178at 619.093 kb on + strand, within GFF3178at 619.094 kb on - strand, within GFF3178at 619.094 kb on - strand, within GFF3178at 619.094 kb on - strand, within GFF3178at 619.189 kb on + strand, within GFF3178at 619.190 kb on - strand, within GFF3178at 619.939 kb on + strand, within GFF3178at 619.939 kb on + strand, within GFF3178at 619.939 kb on + strand, within GFF3178at 619.940 kb on - strand, within GFF3178at 619.940 kb on - strand, within GFF3178at 619.940 kb on - strand, within GFF3178at 620.405 kb on - strand, within GFF3178at 620.420 kb on - strand, within GFF3178at 620.420 kb on - strand, within GFF3178at 620.420 kb on - strand, within GFF3178at 620.455 kb on + strand, within GFF3178at 620.456 kb on - strand, within GFF3178at 620.578 kb on + strand, within GFF3178at 620.578 kb on + strand, within GFF3178at 620.578 kb on + strand, within GFF3178at 620.579 kb on - strand, within GFF3178at 620.579 kb on - strand, within GFF3178at 620.579 kb on - strand, within GFF3178at 620.599 kb on + strand, within GFF3178at 620.599 kb on + strand, within GFF3178at 620.599 kb on + strand, within GFF3178at 620.872 kb on + strand, within GFF3178at 620.872 kb on + strand, within GFF3178at 620.872 kb on + strand, within GFF3178at 620.872 kb on + strand, within GFF3178at 620.873 kb on - strand, within GFF3178at 620.977 kb on + strand, within GFF3178at 621.007 kb on + strand, within GFF3178at 621.008 kb on - strand, within GFF3178at 621.008 kb on - strand, within GFF3178at 621.044 kb on - strand, within GFF3178at 621.044 kb on - strand, within GFF3178at 621.264 kb on + strandat 621.265 kb on - strandat 621.307 kb on + strandat 621.308 kb on - strandat 621.323 kb on + strandat 621.323 kb on + strandat 621.323 kb on + strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.324 kb on - strandat 621.533 kb on + strandat 621.533 kb on + strandat 621.534 kb on - strandat 621.534 kb on - strandat 621.553 kb on + strandat 621.819 kb on - strand, within GFF3179at 621.819 kb on - strand, within GFF3179at 621.819 kb on - strand, within GFF3179at 622.082 kb on + strand, within GFF3179at 622.082 kb on + strand, within GFF3179at 622.082 kb on + strand, within GFF3179at 622.082 kb on + strand, within GFF3179at 622.083 kb on - strand, within GFF3179at 622.083 kb on - strand, within GFF3179at 622.083 kb on - strand, within GFF3179at 622.083 kb on - strand, within GFF3179at 622.178 kb on + strand, within GFF3179at 622.179 kb on - strand, within GFF3179at 622.179 kb on - strand, within GFF3179at 622.179 kb on - strand, within GFF3179at 622.277 kb on + strand, within GFF3179at 622.278 kb on - strand, within GFF3179at 622.278 kb on - strand, within GFF3179at 622.278 kb on - strand, within GFF3179at 622.322 kb on + strand, within GFF3179at 622.322 kb on + strand, within GFF3179at 622.323 kb on - strand, within GFF3179at 622.323 kb on - strand, within GFF3179at 622.323 kb on - strand, within GFF3179at 622.338 kb on + strand, within GFF3179at 622.338 kb on + strand, within GFF3179at 622.447 kb on + strand, within GFF3179at 622.447 kb on + strand, within GFF3179at 622.530 kb on - strandat 622.530 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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617,587 + GFF3176 0.61 -0.4
617,588 - GFF3176 0.61 +0.2
617,588 - GFF3176 0.61 -0.2
617,794 + +0.2
617,809 - -0.9
617,869 + -0.1
617,870 - -1.4
617,870 - -0.3
617,870 - +0.4
617,870 - +0.1
617,946 + +0.2
617,946 + +1.2
617,946 + +0.3
617,947 - -0.1
618,113 + GFF3177 0.80 -0.1
618,178 + +0.8
618,179 - -0.2
618,207 + -0.8
618,208 - -0.1
618,208 - -0.6
618,208 - -0.2
618,261 + -0.2
618,262 - +0.4
618,285 + +0.6
618,300 + -0.2
618,316 + -0.2
618,329 + -0.0
618,335 + -0.0
618,335 + +0.4
618,335 + -0.8
618,405 + -0.3
618,991 + GFF3178 0.17 +1.0
618,991 + GFF3178 0.17 -0.6
618,992 - GFF3178 0.18 -0.6
618,992 - GFF3178 0.18 -1.2
619,093 + GFF3178 0.21 +0.5
619,093 + GFF3178 0.21 -1.0
619,094 - GFF3178 0.21 +0.4
619,094 - GFF3178 0.21 -0.2
619,094 - GFF3178 0.21 -0.7
619,189 + GFF3178 0.24 -0.7
619,190 - GFF3178 0.24 -0.1
619,939 + GFF3178 0.48 -1.0
619,939 + GFF3178 0.48 +0.3
619,939 + GFF3178 0.48 +0.2
619,940 - GFF3178 0.48 -0.3
619,940 - GFF3178 0.48 -0.7
619,940 - GFF3178 0.48 -0.2
620,405 - GFF3178 0.63 +0.2
620,420 - GFF3178 0.63 -0.6
620,420 - GFF3178 0.63 -0.4
620,420 - GFF3178 0.63 -0.7
620,455 + GFF3178 0.65 -1.1
620,456 - GFF3178 0.65 +0.1
620,578 + GFF3178 0.69 -0.3
620,578 + GFF3178 0.69 -0.0
620,578 + GFF3178 0.69 -0.4
620,579 - GFF3178 0.69 -0.3
620,579 - GFF3178 0.69 +0.2
620,579 - GFF3178 0.69 -0.1
620,599 + GFF3178 0.69 +0.7
620,599 + GFF3178 0.69 -0.8
620,599 + GFF3178 0.69 +0.4
620,872 + GFF3178 0.78 +0.1
620,872 + GFF3178 0.78 -0.5
620,872 + GFF3178 0.78 +0.2
620,872 + GFF3178 0.78 -0.9
620,873 - GFF3178 0.78 -0.4
620,977 + GFF3178 0.81 +0.2
621,007 + GFF3178 0.82 -0.1
621,008 - GFF3178 0.82 +0.2
621,008 - GFF3178 0.82 +0.5
621,044 - GFF3178 0.84 -2.0
621,044 - GFF3178 0.84 -0.6
621,264 + -0.1
621,265 - -1.4
621,307 + -0.2
621,308 - +1.2
621,323 + -0.4
621,323 + -0.5
621,323 + +0.0
621,324 - -0.0
621,324 - -0.4
621,324 - -1.3
621,324 - +0.5
621,324 - +0.1
621,324 - +0.4
621,324 - -0.9
621,533 + -0.9
621,533 + -0.4
621,534 - -1.9
621,534 - +0.0
621,553 + -0.8
621,819 - GFF3179 0.23 -1.3
621,819 - GFF3179 0.23 +1.6
621,819 - GFF3179 0.23 -0.9
622,082 + GFF3179 0.49 -1.0
622,082 + GFF3179 0.49 -0.6
622,082 + GFF3179 0.49 -0.0
622,082 + GFF3179 0.49 -0.3
622,083 - GFF3179 0.49 -0.2
622,083 - GFF3179 0.49 -0.3
622,083 - GFF3179 0.49 -0.6
622,083 - GFF3179 0.49 +0.2
622,178 + GFF3179 0.59 -0.6
622,179 - GFF3179 0.59 -0.7
622,179 - GFF3179 0.59 -0.8
622,179 - GFF3179 0.59 +1.4
622,277 + GFF3179 0.69 +0.1
622,278 - GFF3179 0.69 -0.4
622,278 - GFF3179 0.69 -0.9
622,278 - GFF3179 0.69 -0.4
622,322 + GFF3179 0.73 -1.0
622,322 + GFF3179 0.73 +0.6
622,323 - GFF3179 0.73 -0.4
622,323 - GFF3179 0.73 +0.1
622,323 - GFF3179 0.73 -0.4
622,338 + GFF3179 0.75 +0.3
622,338 + GFF3179 0.75 -0.5
622,447 + GFF3179 0.86 -0.8
622,447 + GFF3179 0.86 -0.2
622,530 - -0.1
622,530 - +0.4

Or see this region's nucleotide sequence