Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3156 and GFF3157 are separated by 62 nucleotides GFF3157 and GFF3158 are separated by 4 nucleotides GFF3158 and GFF3159 are separated by 110 nucleotides
GFF3156 - FIG00441737: hypothetical protein, at 592,124 to 593,281
GFF3156
GFF3157 - Sulfite dehydrogenase (quinone), membrane-anchor subunit SoeC (EC 1.8.5.6), at 593,344 to 594,276
GFF3157
GFF3158 - Sulfite dehydrogenase (quinone), iron-sulfur subunit SoeB (EC 1.8.5.6), at 594,281 to 595,009
GFF3158
GFF3159 - Sulfite dehydrogenase (quinone), molybdopterin-containing subunit SoeA (EC 1.8.5.6), at 595,120 to 598,065
GFF3159
Position (kb) 593
594
595 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 592.467 kb on + strand, within GFF3156 at 592.467 kb on + strand, within GFF3156 at 592.467 kb on + strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.468 kb on - strand, within GFF3156 at 592.615 kb on - strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.674 kb on + strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.675 kb on - strand, within GFF3156 at 592.894 kb on - strand, within GFF3156 at 593.157 kb on - strand, within GFF3156 at 593.345 kb on + strand at 593.346 kb on - strand at 593.360 kb on + strand at 593.360 kb on + strand at 593.360 kb on + strand at 593.361 kb on - strand at 593.361 kb on - strand at 593.363 kb on + strand at 593.363 kb on + strand at 593.364 kb on - strand at 593.885 kb on + strand, within GFF3157 at 593.885 kb on + strand, within GFF3157 at 593.903 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 593.924 kb on + strand, within GFF3157 at 594.325 kb on - strand at 594.325 kb on - strand at 594.499 kb on - strand, within GFF3158 at 594.612 kb on + strand, within GFF3158 at 594.753 kb on + strand, within GFF3158 at 594.798 kb on + strand, within GFF3158 at 594.956 kb on - strand at 595.145 kb on + strand at 595.212 kb on - strand at 595.212 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 592,467 + GFF3156 0.30 -0.5 592,467 + GFF3156 0.30 -0.2 592,467 + GFF3156 0.30 -0.4 592,468 - GFF3156 0.30 -0.3 592,468 - GFF3156 0.30 +0.2 592,468 - GFF3156 0.30 -1.0 592,615 - GFF3156 0.42 +0.2 592,674 + GFF3156 0.47 -0.4 592,674 + GFF3156 0.47 -0.1 592,674 + GFF3156 0.47 -0.5 592,674 + GFF3156 0.47 +1.0 592,675 - GFF3156 0.48 +0.0 592,675 - GFF3156 0.48 -1.0 592,675 - GFF3156 0.48 -2.8 592,894 - GFF3156 0.66 -0.3 593,157 - GFF3156 0.89 +1.1 593,345 + +0.4 593,346 - +1.3 593,360 + +0.1 593,360 + +0.4 593,360 + -0.3 593,361 - -0.6 593,361 - +0.4 593,363 + -0.8 593,363 + -0.1 593,364 - -0.2 593,885 + GFF3157 0.58 +0.0 593,885 + GFF3157 0.58 +1.0 593,903 + GFF3157 0.60 -0.1 593,924 + GFF3157 0.62 +0.7 593,924 + GFF3157 0.62 +0.2 593,924 + GFF3157 0.62 +0.4 594,325 - +1.6 594,325 - +0.0 594,499 - GFF3158 0.30 -0.0 594,612 + GFF3158 0.45 -0.2 594,753 + GFF3158 0.65 -0.7 594,798 + GFF3158 0.71 -0.2 594,956 - -0.2 595,145 + -0.6 595,212 - -0.7 595,212 - +1.0
Or see this region's nucleotide sequence