Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3120 and GFF3121 are separated by 258 nucleotides GFF3121 and GFF3122 are separated by 1 nucleotides GFF3122 and GFF3123 are separated by 39 nucleotides GFF3123 and GFF3124 are separated by 232 nucleotides GFF3124 and GFF3125 are separated by 4 nucleotides
GFF3120 - no description, at 548,398 to 549,240
GFF3120
GFF3121 - hypothetical protein, at 549,499 to 549,912
GFF3121
GFF3122 - ATP/GTP-binding protein, at 549,914 to 551,791
GFF3122
GFF3123 - no description, at 551,831 to 552,103
GFF3123
GFF3124 - no description, at 552,336 to 552,674
GFF3124
GFF3125 - no description, at 552,679 to 553,125
GFF3125
Position (kb) 549
550
551
552 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 548.915 kb on + strand, within GFF3120 at 548.916 kb on - strand, within GFF3120 at 549.042 kb on - strand, within GFF3120 at 549.042 kb on - strand, within GFF3120 at 549.078 kb on - strand, within GFF3120 at 549.083 kb on + strand, within GFF3120 at 549.135 kb on + strand, within GFF3120 at 549.135 kb on + strand, within GFF3120 at 549.136 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.140 kb on - strand, within GFF3120 at 549.164 kb on + strand at 549.164 kb on + strand at 549.165 kb on - strand at 549.165 kb on - strand at 549.165 kb on - strand at 549.165 kb on - strand at 549.193 kb on + strand at 549.194 kb on + strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.195 kb on - strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.198 kb on + strand at 549.199 kb on - strand at 549.199 kb on - strand at 549.199 kb on - strand at 549.199 kb on - strand at 549.258 kb on + strand at 549.320 kb on + strand at 549.320 kb on + strand at 549.321 kb on - strand at 549.321 kb on - strand at 549.321 kb on - strand at 549.321 kb on - strand at 549.382 kb on + strand at 549.383 kb on - strand at 549.438 kb on + strand at 549.438 kb on + strand at 549.439 kb on - strand at 549.439 kb on - strand at 549.444 kb on + strand at 549.444 kb on + strand at 549.444 kb on + strand at 549.444 kb on + strand at 549.444 kb on + strand at 549.445 kb on - strand at 549.445 kb on - strand at 549.445 kb on - strand at 549.540 kb on - strand at 549.623 kb on + strand, within GFF3121 at 549.623 kb on + strand, within GFF3121 at 549.624 kb on - strand, within GFF3121 at 549.758 kb on - strand, within GFF3121 at 549.855 kb on - strand, within GFF3121 at 549.923 kb on + strand at 549.995 kb on + strand at 549.995 kb on + strand at 550.061 kb on + strand at 550.062 kb on - strand at 550.062 kb on - strand at 550.062 kb on - strand at 550.062 kb on - strand at 550.074 kb on + strand at 550.074 kb on + strand at 550.209 kb on + strand, within GFF3122 at 550.210 kb on - strand, within GFF3122 at 550.237 kb on + strand, within GFF3122 at 550.237 kb on + strand, within GFF3122 at 550.238 kb on - strand, within GFF3122 at 550.238 kb on - strand, within GFF3122 at 550.262 kb on + strand, within GFF3122 at 550.262 kb on + strand, within GFF3122 at 550.263 kb on - strand, within GFF3122 at 550.263 kb on - strand, within GFF3122 at 550.263 kb on - strand, within GFF3122 at 550.263 kb on - strand, within GFF3122 at 550.302 kb on - strand, within GFF3122 at 550.317 kb on - strand, within GFF3122 at 550.317 kb on - strand, within GFF3122 at 550.317 kb on - strand, within GFF3122 at 550.371 kb on + strand, within GFF3122 at 550.371 kb on + strand, within GFF3122 at 550.372 kb on - strand, within GFF3122 at 550.385 kb on + strand, within GFF3122 at 550.385 kb on + strand, within GFF3122 at 550.393 kb on + strand, within GFF3122 at 550.398 kb on - strand, within GFF3122 at 550.398 kb on - strand, within GFF3122 at 550.431 kb on - strand, within GFF3122 at 550.439 kb on + strand, within GFF3122 at 550.440 kb on - strand, within GFF3122 at 550.440 kb on - strand, within GFF3122 at 550.563 kb on + strand, within GFF3122 at 550.796 kb on + strand, within GFF3122 at 550.796 kb on + strand, within GFF3122 at 550.797 kb on - strand, within GFF3122 at 550.797 kb on - strand, within GFF3122 at 550.869 kb on - strand, within GFF3122 at 551.177 kb on + strand, within GFF3122 at 551.177 kb on + strand, within GFF3122 at 551.177 kb on + strand, within GFF3122 at 551.178 kb on - strand, within GFF3122 at 551.505 kb on - strand, within GFF3122 at 551.505 kb on - strand, within GFF3122 at 551.673 kb on - strand at 551.708 kb on + strand at 551.708 kb on + strand at 551.714 kb on + strand at 551.714 kb on + strand at 551.741 kb on + strand at 551.741 kb on + strand at 551.742 kb on - strand at 551.790 kb on - strand at 552.088 kb on + strand at 552.127 kb on - strand at 552.161 kb on + strand at 552.253 kb on + strand at 552.253 kb on + strand at 552.253 kb on + strand at 552.358 kb on - strand at 552.699 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 548,915 + GFF3120 0.61 -0.0 548,916 - GFF3120 0.61 +0.5 549,042 - GFF3120 0.76 -0.5 549,042 - GFF3120 0.76 -0.3 549,078 - GFF3120 0.81 -0.4 549,083 + GFF3120 0.81 +1.2 549,135 + GFF3120 0.87 -0.2 549,135 + GFF3120 0.87 -0.9 549,136 - GFF3120 0.88 -0.4 549,140 - GFF3120 0.88 -0.2 549,140 - GFF3120 0.88 -0.9 549,140 - GFF3120 0.88 +0.4 549,140 - GFF3120 0.88 -0.2 549,140 - GFF3120 0.88 +0.2 549,140 - GFF3120 0.88 -0.2 549,164 + -0.2 549,164 + -0.7 549,165 - -0.4 549,165 - -1.0 549,165 - -0.0 549,165 - -0.3 549,193 + -1.3 549,194 + +0.2 549,195 - +0.8 549,195 - +0.1 549,195 - +1.5 549,195 - +0.2 549,195 - +1.0 549,195 - -0.4 549,198 + -0.8 549,198 + +0.2 549,198 + -0.6 549,198 + -0.5 549,198 + +0.8 549,198 + +0.3 549,198 + -0.6 549,198 + -0.6 549,199 - +0.2 549,199 - -0.1 549,199 - -0.3 549,199 - -0.5 549,258 + +0.2 549,320 + -0.3 549,320 + -0.6 549,321 - -0.2 549,321 - +0.1 549,321 - -0.6 549,321 - -0.9 549,382 + +0.1 549,383 - +0.0 549,438 + -1.7 549,438 + +0.5 549,439 - +0.2 549,439 - -0.0 549,444 + -0.1 549,444 + -1.1 549,444 + +0.1 549,444 + +0.2 549,444 + +0.3 549,445 - -0.8 549,445 - -0.7 549,445 - +0.0 549,540 - +0.2 549,623 + GFF3121 0.30 -0.2 549,623 + GFF3121 0.30 +0.1 549,624 - GFF3121 0.30 +0.1 549,758 - GFF3121 0.63 -0.5 549,855 - GFF3121 0.86 -0.3 549,923 + -0.5 549,995 + -0.3 549,995 + -0.1 550,061 + -0.2 550,062 - -0.1 550,062 - -0.3 550,062 - -0.0 550,062 - -0.6 550,074 + -1.0 550,074 + +0.5 550,209 + GFF3122 0.16 -0.1 550,210 - GFF3122 0.16 +0.1 550,237 + GFF3122 0.17 +3.0 550,237 + GFF3122 0.17 -0.0 550,238 - GFF3122 0.17 -0.1 550,238 - GFF3122 0.17 +0.4 550,262 + GFF3122 0.19 +0.0 550,262 + GFF3122 0.19 +1.1 550,263 - GFF3122 0.19 -0.5 550,263 - GFF3122 0.19 -0.3 550,263 - GFF3122 0.19 -1.2 550,263 - GFF3122 0.19 -0.3 550,302 - GFF3122 0.21 -0.2 550,317 - GFF3122 0.21 +0.1 550,317 - GFF3122 0.21 +0.2 550,317 - GFF3122 0.21 +0.5 550,371 + GFF3122 0.24 -0.2 550,371 + GFF3122 0.24 -0.5 550,372 - GFF3122 0.24 +0.8 550,385 + GFF3122 0.25 -2.1 550,385 + GFF3122 0.25 -0.2 550,393 + GFF3122 0.26 -0.1 550,398 - GFF3122 0.26 -0.0 550,398 - GFF3122 0.26 +0.2 550,431 - GFF3122 0.28 +0.2 550,439 + GFF3122 0.28 +0.3 550,440 - GFF3122 0.28 +0.2 550,440 - GFF3122 0.28 -0.3 550,563 + GFF3122 0.35 -0.8 550,796 + GFF3122 0.47 -0.8 550,796 + GFF3122 0.47 +0.4 550,797 - GFF3122 0.47 -0.6 550,797 - GFF3122 0.47 +0.1 550,869 - GFF3122 0.51 -0.1 551,177 + GFF3122 0.67 -0.1 551,177 + GFF3122 0.67 +0.4 551,177 + GFF3122 0.67 +0.5 551,178 - GFF3122 0.67 -0.3 551,505 - GFF3122 0.85 -0.2 551,505 - GFF3122 0.85 -0.0 551,673 - +0.1 551,708 + +1.2 551,708 + -0.1 551,714 + -1.5 551,714 + +0.2 551,741 + -0.2 551,741 + +0.2 551,742 - -0.9 551,790 - -0.3 552,088 + -1.0 552,127 - -0.1 552,161 + -0.0 552,253 + +1.0 552,253 + -0.3 552,253 + -0.2 552,358 - +1.4 552,699 - -0.0
Or see this region's nucleotide sequence