Strain Fitness in Variovorax sp. SCN45 around GFF3108

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3107 and GFF3108 are separated by 26 nucleotidesGFF3108 and GFF3109 are separated by 115 nucleotidesGFF3109 and GFF3110 overlap by 4 nucleotides GFF3107 - Oxidoreductase, aldo/keto reductase family, at 534,309 to 535,319 GFF3107 GFF3108 - Transcriptional regulator, LysR family, at 535,346 to 536,350 GFF3108 GFF3109 - Methionine ABC transporter substrate-binding protein, at 536,466 to 537,299 GFF3109 GFF3110 - Nitrilotriacetate monooxygenase component A (EC 1.14.13.-), at 537,296 to 538,645 GFF3110 Position (kb) 535 536 537Strain fitness (log2 ratio) -2 -1 0 1 2at 534.703 kb on + strand, within GFF3107at 534.778 kb on + strand, within GFF3107at 534.807 kb on + strand, within GFF3107at 534.807 kb on + strand, within GFF3107at 534.808 kb on - strand, within GFF3107at 534.808 kb on - strand, within GFF3107at 534.808 kb on - strand, within GFF3107at 534.868 kb on + strand, within GFF3107at 534.868 kb on + strand, within GFF3107at 534.869 kb on - strand, within GFF3107at 534.947 kb on - strand, within GFF3107at 534.985 kb on + strand, within GFF3107at 534.985 kb on + strand, within GFF3107at 534.985 kb on + strand, within GFF3107at 534.985 kb on + strand, within GFF3107at 534.986 kb on - strand, within GFF3107at 535.024 kb on + strand, within GFF3107at 535.025 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.154 kb on - strand, within GFF3107at 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.240 kb on + strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.241 kb on - strandat 535.887 kb on - strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 535.970 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.174 kb on + strand, within GFF3108at 536.175 kb on - strand, within GFF3108at 536.175 kb on - strand, within GFF3108at 536.175 kb on - strand, within GFF3108at 536.189 kb on + strand, within GFF3108at 536.190 kb on - strand, within GFF3108at 536.190 kb on - strand, within GFF3108at 536.190 kb on - strand, within GFF3108at 536.270 kb on + strandat 536.270 kb on + strandat 536.271 kb on - strandat 536.271 kb on - strandat 536.271 kb on - strandat 536.271 kb on - strandat 536.273 kb on + strandat 536.273 kb on + strandat 536.274 kb on - strandat 536.274 kb on - strandat 536.274 kb on - strandat 536.366 kb on + strandat 536.367 kb on - strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.426 kb on + strandat 536.427 kb on - strandat 536.427 kb on - strandat 536.427 kb on - strandat 536.585 kb on + strand, within GFF3109at 536.586 kb on - strand, within GFF3109at 536.586 kb on - strand, within GFF3109at 536.599 kb on - strand, within GFF3109at 536.649 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.661 kb on + strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.662 kb on - strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.745 kb on + strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.746 kb on - strand, within GFF3109at 536.823 kb on + strand, within GFF3109at 536.824 kb on - strand, within GFF3109at 536.824 kb on - strand, within GFF3109at 537.147 kb on + strand, within GFF3109at 537.147 kb on + strand, within GFF3109at 537.148 kb on - strand, within GFF3109at 537.285 kb on + strandat 537.285 kb on + strandat 537.285 kb on + strandat 537.286 kb on - strandat 537.286 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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534,703 + GFF3107 0.39 -0.3
534,778 + GFF3107 0.46 -0.1
534,807 + GFF3107 0.49 -0.2
534,807 + GFF3107 0.49 -0.2
534,808 - GFF3107 0.49 -0.4
534,808 - GFF3107 0.49 +0.1
534,808 - GFF3107 0.49 -0.4
534,868 + GFF3107 0.55 -0.2
534,868 + GFF3107 0.55 -0.7
534,869 - GFF3107 0.55 -0.6
534,947 - GFF3107 0.63 +0.5
534,985 + GFF3107 0.67 -0.1
534,985 + GFF3107 0.67 -0.6
534,985 + GFF3107 0.67 +0.2
534,985 + GFF3107 0.67 -0.0
534,986 - GFF3107 0.67 +0.2
535,024 + GFF3107 0.71 -0.7
535,025 - GFF3107 0.71 -0.2
535,154 - GFF3107 0.84 +0.8
535,154 - GFF3107 0.84 -1.4
535,154 - GFF3107 0.84 +1.4
535,154 - GFF3107 0.84 -0.2
535,154 - GFF3107 0.84 +0.4
535,240 + -0.6
535,240 + +0.7
535,240 + +0.1
535,240 + -0.2
535,240 + -1.0
535,240 + -0.2
535,240 + -1.5
535,240 + -0.2
535,240 + -0.5
535,240 + -0.4
535,240 + -0.1
535,240 + -0.2
535,240 + -0.3
535,241 - +0.2
535,241 - -0.2
535,241 - +0.1
535,241 - -0.4
535,241 - -0.6
535,241 - +0.3
535,241 - +0.1
535,241 - -0.0
535,241 - -0.6
535,241 - -0.5
535,241 - +0.1
535,241 - +0.4
535,241 - -0.3
535,241 - +1.0
535,887 - GFF3108 0.54 -0.8
535,970 + GFF3108 0.62 +0.3
535,970 + GFF3108 0.62 +0.5
535,970 + GFF3108 0.62 -2.6
535,970 + GFF3108 0.62 -0.0
535,970 + GFF3108 0.62 -1.5
535,970 + GFF3108 0.62 +0.9
536,174 + GFF3108 0.82 -0.2
536,174 + GFF3108 0.82 -0.6
536,174 + GFF3108 0.82 -0.4
536,174 + GFF3108 0.82 -0.5
536,174 + GFF3108 0.82 -0.4
536,174 + GFF3108 0.82 -2.6
536,174 + GFF3108 0.82 -0.6
536,174 + GFF3108 0.82 -1.3
536,175 - GFF3108 0.82 -0.0
536,175 - GFF3108 0.82 -0.4
536,175 - GFF3108 0.82 -1.6
536,189 + GFF3108 0.84 +0.2
536,190 - GFF3108 0.84 -1.3
536,190 - GFF3108 0.84 -1.0
536,190 - GFF3108 0.84 -0.0
536,270 + +1.8
536,270 + -0.0
536,271 - -1.0
536,271 - -1.7
536,271 - -0.8
536,271 - +0.4
536,273 + -0.2
536,273 + -0.1
536,274 - +0.2
536,274 - -0.2
536,274 - -0.5
536,366 + -0.2
536,367 - +0.4
536,426 + -0.3
536,426 + +1.4
536,426 + -1.3
536,426 + +0.1
536,426 + -0.8
536,427 - -0.4
536,427 - +0.8
536,427 - -1.1
536,585 + GFF3109 0.14 -1.2
536,586 - GFF3109 0.14 -1.0
536,586 - GFF3109 0.14 -0.8
536,599 - GFF3109 0.16 -0.0
536,649 + GFF3109 0.22 -1.0
536,661 + GFF3109 0.23 -0.2
536,661 + GFF3109 0.23 +0.2
536,661 + GFF3109 0.23 -0.2
536,662 - GFF3109 0.24 -0.3
536,662 - GFF3109 0.24 -0.2
536,662 - GFF3109 0.24 +1.3
536,662 - GFF3109 0.24 -0.4
536,662 - GFF3109 0.24 +1.4
536,662 - GFF3109 0.24 +0.0
536,662 - GFF3109 0.24 -0.8
536,745 + GFF3109 0.33 -0.3
536,745 + GFF3109 0.33 +0.5
536,745 + GFF3109 0.33 -0.5
536,746 - GFF3109 0.34 +0.1
536,746 - GFF3109 0.34 -0.1
536,746 - GFF3109 0.34 +0.6
536,746 - GFF3109 0.34 +0.4
536,823 + GFF3109 0.43 -0.5
536,824 - GFF3109 0.43 +0.4
536,824 - GFF3109 0.43 +0.9
537,147 + GFF3109 0.82 -0.1
537,147 + GFF3109 0.82 -0.7
537,148 - GFF3109 0.82 +0.4
537,285 + -1.0
537,285 + +0.0
537,285 + +1.2
537,286 - +0.3
537,286 - -0.8

Or see this region's nucleotide sequence