Strain Fitness in Variovorax sp. SCN45 around GFF3072

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3069 and GFF3070 are separated by 18 nucleotidesGFF3070 and GFF3071 overlap by 4 nucleotidesGFF3071 and GFF3072 overlap by 16 nucleotidesGFF3072 and GFF3073 are separated by 50 nucleotides GFF3069 - Glutamine synthetase type I (EC 6.3.1.2), at 502,704 to 504,119 GFF3069 GFF3070 - no description, at 504,138 to 504,269 GFF3070 GFF3071 - ADP-ribose pyrophosphatase of COG1058 family (EC 3.6.1.13), at 504,266 to 505,078 GFF3071 GFF3072 - Putative transmembrane protein, at 505,063 to 505,953 GFF3072 GFF3073 - Fatty acid hydroxylase family (carotene hydroxylase/sterol desaturase), at 506,004 to 506,978 GFF3073 Position (kb) 505 506Strain fitness (log2 ratio) -2 -1 0 1 2at 504.153 kb on - strand, within GFF3070at 504.153 kb on - strand, within GFF3070at 504.153 kb on - strand, within GFF3070at 504.153 kb on - strand, within GFF3070at 504.153 kb on - strand, within GFF3070at 504.153 kb on - strand, within GFF3070at 504.153 kb on - strand, within GFF3070at 504.319 kb on + strandat 504.319 kb on + strandat 504.330 kb on + strandat 504.330 kb on + strandat 504.330 kb on + strandat 504.331 kb on - strandat 504.331 kb on - strandat 504.331 kb on - strandat 504.388 kb on - strand, within GFF3071at 504.444 kb on + strand, within GFF3071at 504.540 kb on + strand, within GFF3071at 504.540 kb on + strand, within GFF3071at 504.541 kb on - strand, within GFF3071at 504.639 kb on + strand, within GFF3071at 504.639 kb on + strand, within GFF3071at 504.639 kb on + strand, within GFF3071at 504.639 kb on + strand, within GFF3071at 504.639 kb on + strand, within GFF3071at 504.640 kb on - strand, within GFF3071at 504.640 kb on - strand, within GFF3071at 504.640 kb on - strand, within GFF3071at 504.640 kb on - strand, within GFF3071at 504.720 kb on + strand, within GFF3071at 504.720 kb on + strand, within GFF3071at 504.939 kb on + strand, within GFF3071at 504.939 kb on + strand, within GFF3071at 504.939 kb on + strand, within GFF3071at 504.939 kb on + strand, within GFF3071at 504.940 kb on - strand, within GFF3071at 504.940 kb on - strand, within GFF3071at 504.940 kb on - strand, within GFF3071at 504.940 kb on - strand, within GFF3071at 505.196 kb on + strand, within GFF3072at 505.196 kb on + strand, within GFF3072at 505.196 kb on + strand, within GFF3072at 505.196 kb on + strand, within GFF3072at 505.197 kb on - strand, within GFF3072at 505.197 kb on - strand, within GFF3072at 505.197 kb on - strand, within GFF3072at 505.197 kb on - strand, within GFF3072at 505.197 kb on - strand, within GFF3072at 505.197 kb on - strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.238 kb on + strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.239 kb on - strand, within GFF3072at 505.328 kb on + strand, within GFF3072at 505.329 kb on - strand, within GFF3072at 505.830 kb on - strand, within GFF3072at 505.830 kb on - strand, within GFF3072at 505.836 kb on - strand, within GFF3072at 505.913 kb on + strandat 505.914 kb on - strandat 505.914 kb on - strandat 506.065 kb on + strandat 506.539 kb on + strand, within GFF3073at 506.566 kb on + strand, within GFF3073at 506.566 kb on + strand, within GFF3073at 506.567 kb on - strand, within GFF3073at 506.734 kb on + strand, within GFF3073at 506.734 kb on + strand, within GFF3073at 506.735 kb on - strand, within GFF3073

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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504,153 - GFF3070 0.11 +1.0
504,153 - GFF3070 0.11 +0.8
504,153 - GFF3070 0.11 -0.2
504,153 - GFF3070 0.11 -0.4
504,153 - GFF3070 0.11 +0.4
504,153 - GFF3070 0.11 +1.0
504,153 - GFF3070 0.11 +0.3
504,319 + -0.3
504,319 + -0.5
504,330 + -1.1
504,330 + +0.6
504,330 + -1.2
504,331 - +0.7
504,331 - +0.4
504,331 - +0.2
504,388 - GFF3071 0.15 -0.6
504,444 + GFF3071 0.22 +0.0
504,540 + GFF3071 0.34 +0.8
504,540 + GFF3071 0.34 +0.2
504,541 - GFF3071 0.34 -2.0
504,639 + GFF3071 0.46 +0.5
504,639 + GFF3071 0.46 -0.2
504,639 + GFF3071 0.46 -0.7
504,639 + GFF3071 0.46 -0.6
504,639 + GFF3071 0.46 +1.8
504,640 - GFF3071 0.46 +0.3
504,640 - GFF3071 0.46 -0.4
504,640 - GFF3071 0.46 +0.1
504,640 - GFF3071 0.46 -0.2
504,720 + GFF3071 0.56 -0.3
504,720 + GFF3071 0.56 -0.3
504,939 + GFF3071 0.83 +0.1
504,939 + GFF3071 0.83 +0.8
504,939 + GFF3071 0.83 +0.3
504,939 + GFF3071 0.83 +0.2
504,940 - GFF3071 0.83 -0.6
504,940 - GFF3071 0.83 -0.7
504,940 - GFF3071 0.83 -1.4
504,940 - GFF3071 0.83 -0.7
505,196 + GFF3072 0.15 +0.2
505,196 + GFF3072 0.15 -0.7
505,196 + GFF3072 0.15 +0.4
505,196 + GFF3072 0.15 -0.5
505,197 - GFF3072 0.15 -0.8
505,197 - GFF3072 0.15 -0.8
505,197 - GFF3072 0.15 +1.4
505,197 - GFF3072 0.15 -0.6
505,197 - GFF3072 0.15 -1.0
505,197 - GFF3072 0.15 -0.9
505,238 + GFF3072 0.20 -0.5
505,238 + GFF3072 0.20 +0.1
505,238 + GFF3072 0.20 -0.2
505,238 + GFF3072 0.20 -1.1
505,238 + GFF3072 0.20 -0.4
505,238 + GFF3072 0.20 +0.3
505,238 + GFF3072 0.20 -0.8
505,238 + GFF3072 0.20 -0.7
505,238 + GFF3072 0.20 +1.1
505,239 - GFF3072 0.20 -0.3
505,239 - GFF3072 0.20 -0.7
505,239 - GFF3072 0.20 +0.1
505,239 - GFF3072 0.20 +0.3
505,239 - GFF3072 0.20 -0.2
505,239 - GFF3072 0.20 -1.0
505,239 - GFF3072 0.20 -0.8
505,239 - GFF3072 0.20 -1.0
505,239 - GFF3072 0.20 +0.0
505,239 - GFF3072 0.20 +0.2
505,239 - GFF3072 0.20 -0.0
505,328 + GFF3072 0.30 -0.5
505,329 - GFF3072 0.30 +0.4
505,830 - GFF3072 0.86 +0.2
505,830 - GFF3072 0.86 -0.9
505,836 - GFF3072 0.87 -0.6
505,913 + +0.0
505,914 - +0.3
505,914 - -0.2
506,065 + -0.2
506,539 + GFF3073 0.55 -0.2
506,566 + GFF3073 0.58 +0.2
506,566 + GFF3073 0.58 +0.1
506,567 - GFF3073 0.58 -1.8
506,734 + GFF3073 0.75 -1.0
506,734 + GFF3073 0.75 -1.0
506,735 - GFF3073 0.75 +0.2

Or see this region's nucleotide sequence