Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF3061 and GFF3062 overlap by 11 nucleotides GFF3062 and GFF3063 are separated by 37 nucleotides GFF3063 and GFF3064 are separated by 137 nucleotides GFF3064 and GFF3065 are separated by 4 nucleotides
GFF3061 - BUG/TctC family periplasmic protein, at 494,982 to 495,953
GFF3061
GFF3062 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 495,943 to 496,653
GFF3062
GFF3063 - mandelate racemase/muconate lactonizing enzyme family protein, at 496,691 to 497,857
GFF3063
GFF3064 - Exodeoxyribonuclease III (EC 3.1.11.2), at 497,995 to 498,780
GFF3064
GFF3065 - hypothetical protein, at 498,785 to 499,336
GFF3065
Position (kb) 496
497
498 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 495.720 kb on + strand, within GFF3061 at 495.729 kb on + strand, within GFF3061 at 495.729 kb on + strand, within GFF3061 at 495.729 kb on + strand, within GFF3061 at 495.729 kb on + strand, within GFF3061 at 495.730 kb on - strand, within GFF3061 at 495.730 kb on - strand, within GFF3061 at 495.738 kb on + strand, within GFF3061 at 496.372 kb on + strand, within GFF3062 at 496.372 kb on + strand, within GFF3062 at 496.372 kb on + strand, within GFF3062 at 496.373 kb on - strand, within GFF3062 at 496.373 kb on - strand, within GFF3062 at 496.373 kb on - strand, within GFF3062 at 496.751 kb on + strand at 497.082 kb on - strand, within GFF3063 at 497.082 kb on - strand, within GFF3063 at 497.082 kb on - strand, within GFF3063 at 497.153 kb on + strand, within GFF3063 at 497.154 kb on - strand, within GFF3063 at 497.156 kb on + strand, within GFF3063 at 497.156 kb on + strand, within GFF3063 at 497.156 kb on + strand, within GFF3063 at 497.156 kb on + strand, within GFF3063 at 497.156 kb on + strand, within GFF3063 at 497.156 kb on + strand, within GFF3063 at 497.156 kb on + strand, within GFF3063 at 497.156 kb on + strand, within GFF3063 at 497.157 kb on - strand, within GFF3063 at 497.157 kb on - strand, within GFF3063 at 497.157 kb on - strand, within GFF3063 at 497.157 kb on - strand, within GFF3063 at 497.157 kb on - strand, within GFF3063 at 497.159 kb on + strand, within GFF3063 at 497.159 kb on + strand, within GFF3063 at 497.204 kb on + strand, within GFF3063 at 497.204 kb on + strand, within GFF3063 at 497.204 kb on + strand, within GFF3063 at 497.220 kb on - strand, within GFF3063 at 497.399 kb on + strand, within GFF3063 at 497.400 kb on - strand, within GFF3063 at 497.427 kb on - strand, within GFF3063 at 497.456 kb on + strand, within GFF3063 at 497.456 kb on + strand, within GFF3063 at 497.457 kb on - strand, within GFF3063 at 497.457 kb on - strand, within GFF3063 at 497.457 kb on - strand, within GFF3063 at 497.457 kb on - strand, within GFF3063 at 497.576 kb on + strand, within GFF3063 at 497.576 kb on + strand, within GFF3063 at 497.577 kb on - strand, within GFF3063 at 497.577 kb on - strand, within GFF3063 at 497.714 kb on + strand, within GFF3063 at 497.714 kb on + strand, within GFF3063 at 497.714 kb on + strand, within GFF3063 at 497.714 kb on + strand, within GFF3063 at 497.715 kb on - strand, within GFF3063 at 497.736 kb on - strand, within GFF3063 at 497.736 kb on - strand, within GFF3063 at 497.774 kb on + strand at 497.774 kb on + strand at 497.775 kb on - strand at 497.775 kb on - strand at 497.856 kb on - strand at 497.856 kb on - strand at 497.892 kb on + strand at 497.892 kb on + strand at 497.893 kb on - strand at 497.893 kb on - strand at 497.942 kb on + strand at 497.942 kb on + strand at 497.943 kb on - strand at 497.943 kb on - strand at 497.943 kb on - strand at 497.943 kb on - strand at 498.002 kb on + strand at 498.002 kb on + strand at 498.002 kb on + strand at 498.002 kb on + strand at 498.002 kb on + strand at 498.003 kb on - strand at 498.003 kb on - strand at 498.006 kb on + strand at 498.006 kb on + strand at 498.006 kb on + strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.007 kb on - strand at 498.358 kb on + strand, within GFF3064 at 498.359 kb on - strand, within GFF3064 at 498.359 kb on - strand, within GFF3064 at 498.610 kb on + strand, within GFF3064 at 498.610 kb on + strand, within GFF3064 at 498.611 kb on - strand, within GFF3064 at 498.611 kb on - strand, within GFF3064
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 495,720 + GFF3061 0.76 +1.2 495,729 + GFF3061 0.77 -0.6 495,729 + GFF3061 0.77 +0.6 495,729 + GFF3061 0.77 -0.6 495,729 + GFF3061 0.77 +0.2 495,730 - GFF3061 0.77 -1.1 495,730 - GFF3061 0.77 -0.2 495,738 + GFF3061 0.78 -0.4 496,372 + GFF3062 0.60 -0.1 496,372 + GFF3062 0.60 -0.7 496,372 + GFF3062 0.60 +0.4 496,373 - GFF3062 0.60 -0.6 496,373 - GFF3062 0.60 -0.8 496,373 - GFF3062 0.60 -0.4 496,751 + +0.7 497,082 - GFF3063 0.34 -0.6 497,082 - GFF3063 0.34 +0.5 497,082 - GFF3063 0.34 -0.8 497,153 + GFF3063 0.40 -0.1 497,154 - GFF3063 0.40 -0.0 497,156 + GFF3063 0.40 -0.3 497,156 + GFF3063 0.40 +1.4 497,156 + GFF3063 0.40 -0.4 497,156 + GFF3063 0.40 -0.2 497,156 + GFF3063 0.40 +0.8 497,156 + GFF3063 0.40 -0.8 497,156 + GFF3063 0.40 -1.4 497,156 + GFF3063 0.40 -0.9 497,157 - GFF3063 0.40 -0.6 497,157 - GFF3063 0.40 +0.8 497,157 - GFF3063 0.40 -0.8 497,157 - GFF3063 0.40 +0.4 497,157 - GFF3063 0.40 -0.7 497,159 + GFF3063 0.40 -0.3 497,159 + GFF3063 0.40 -1.1 497,204 + GFF3063 0.44 -0.9 497,204 + GFF3063 0.44 -0.5 497,204 + GFF3063 0.44 -1.2 497,220 - GFF3063 0.45 +0.8 497,399 + GFF3063 0.61 -0.3 497,400 - GFF3063 0.61 -1.5 497,427 - GFF3063 0.63 -0.7 497,456 + GFF3063 0.66 -0.1 497,456 + GFF3063 0.66 -0.9 497,457 - GFF3063 0.66 -0.2 497,457 - GFF3063 0.66 +0.8 497,457 - GFF3063 0.66 -0.7 497,457 - GFF3063 0.66 -1.3 497,576 + GFF3063 0.76 +0.2 497,576 + GFF3063 0.76 -0.9 497,577 - GFF3063 0.76 -1.2 497,577 - GFF3063 0.76 -0.0 497,714 + GFF3063 0.88 -0.6 497,714 + GFF3063 0.88 +0.3 497,714 + GFF3063 0.88 +0.6 497,714 + GFF3063 0.88 -0.2 497,715 - GFF3063 0.88 -0.9 497,736 - GFF3063 0.90 -0.0 497,736 - GFF3063 0.90 -1.1 497,774 + -0.7 497,774 + -0.8 497,775 - +0.8 497,775 - +0.2 497,856 - +0.3 497,856 - -0.2 497,892 + -0.2 497,892 + -0.1 497,893 - +0.7 497,893 - +0.4 497,942 + +1.1 497,942 + -0.2 497,943 - -0.3 497,943 - -1.1 497,943 - -0.9 497,943 - -1.0 498,002 + -3.2 498,002 + -0.3 498,002 + +1.2 498,002 + +0.2 498,002 + +0.1 498,003 - -0.8 498,003 - +0.2 498,006 + -0.8 498,006 + -1.3 498,006 + -0.9 498,007 - -0.0 498,007 - -0.2 498,007 - +0.4 498,007 - -0.8 498,007 - -0.7 498,007 - +0.1 498,358 + GFF3064 0.46 -0.3 498,359 - GFF3064 0.46 -0.7 498,359 - GFF3064 0.46 -1.3 498,610 + GFF3064 0.78 +0.2 498,610 + GFF3064 0.78 +0.0 498,611 - GFF3064 0.78 +0.5 498,611 - GFF3064 0.78 +0.2
Or see this region's nucleotide sequence