Strain Fitness in Variovorax sp. SCN45 around GFF3060

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3059 and GFF3060 are separated by 108 nucleotidesGFF3060 and GFF3061 are separated by 58 nucleotides GFF3059 - Transcriptional regulator, LysR family, at 492,950 to 493,876 GFF3059 GFF3060 - Dihydrodipicolinate synthase family, at 493,985 to 494,923 GFF3060 GFF3061 - BUG/TctC family periplasmic protein, at 494,982 to 495,953 GFF3061 Position (kb) 493 494 495Strain fitness (log2 ratio) -2 -1 0 1 2 3at 493.025 kb on + strandat 493.025 kb on + strandat 493.025 kb on + strandat 493.025 kb on + strandat 493.025 kb on + strandat 493.025 kb on + strandat 493.025 kb on + strandat 493.025 kb on + strandat 493.026 kb on - strandat 493.026 kb on - strandat 493.026 kb on - strandat 493.026 kb on - strandat 493.026 kb on - strandat 493.026 kb on - strandat 493.026 kb on - strandat 493.026 kb on - strandat 493.264 kb on - strand, within GFF3059at 493.264 kb on - strand, within GFF3059at 493.467 kb on + strand, within GFF3059at 493.467 kb on + strand, within GFF3059at 493.467 kb on + strand, within GFF3059at 493.467 kb on + strand, within GFF3059at 493.468 kb on - strand, within GFF3059at 493.468 kb on - strand, within GFF3059at 493.468 kb on - strand, within GFF3059at 493.893 kb on + strandat 493.893 kb on + strandat 493.893 kb on + strandat 493.893 kb on + strandat 493.894 kb on - strandat 493.899 kb on + strandat 493.899 kb on + strandat 493.899 kb on + strandat 493.899 kb on + strandat 493.899 kb on + strandat 493.900 kb on - strandat 493.900 kb on - strandat 493.900 kb on - strandat 493.900 kb on - strandat 493.912 kb on + strandat 493.913 kb on - strandat 494.441 kb on + strand, within GFF3060at 494.441 kb on + strand, within GFF3060at 494.442 kb on - strand, within GFF3060at 494.480 kb on + strand, within GFF3060at 494.522 kb on + strand, within GFF3060at 494.522 kb on + strand, within GFF3060at 494.523 kb on - strand, within GFF3060at 494.591 kb on + strand, within GFF3060at 494.754 kb on - strand, within GFF3060at 494.754 kb on - strand, within GFF3060at 494.807 kb on + strand, within GFF3060at 494.807 kb on + strand, within GFF3060at 494.807 kb on + strand, within GFF3060at 494.808 kb on - strand, within GFF3060at 494.808 kb on - strand, within GFF3060at 495.246 kb on + strand, within GFF3061at 495.309 kb on + strand, within GFF3061at 495.310 kb on - strand, within GFF3061at 495.417 kb on + strand, within GFF3061at 495.417 kb on + strand, within GFF3061at 495.417 kb on + strand, within GFF3061at 495.417 kb on + strand, within GFF3061at 495.418 kb on - strand, within GFF3061at 495.418 kb on - strand, within GFF3061at 495.418 kb on - strand, within GFF3061at 495.522 kb on + strand, within GFF3061at 495.522 kb on + strand, within GFF3061at 495.537 kb on + strand, within GFF3061at 495.537 kb on + strand, within GFF3061at 495.538 kb on - strand, within GFF3061at 495.538 kb on - strand, within GFF3061at 495.621 kb on + strand, within GFF3061at 495.622 kb on - strand, within GFF3061at 495.622 kb on - strand, within GFF3061at 495.720 kb on + strand, within GFF3061at 495.729 kb on + strand, within GFF3061at 495.729 kb on + strand, within GFF3061at 495.729 kb on + strand, within GFF3061at 495.729 kb on + strand, within GFF3061at 495.730 kb on - strand, within GFF3061at 495.730 kb on - strand, within GFF3061at 495.738 kb on + strand, within GFF3061

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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493,025 + -1.8
493,025 + -0.1
493,025 + -1.8
493,025 + -0.1
493,025 + -0.2
493,025 + +1.2
493,025 + -0.2
493,025 + -0.5
493,026 - +1.1
493,026 - +1.2
493,026 - +0.1
493,026 - -0.6
493,026 - -0.2
493,026 - +0.2
493,026 - -0.2
493,026 - +2.8
493,264 - GFF3059 0.34 +0.1
493,264 - GFF3059 0.34 +0.2
493,467 + GFF3059 0.56 +0.8
493,467 + GFF3059 0.56 -1.7
493,467 + GFF3059 0.56 +0.2
493,467 + GFF3059 0.56 -0.2
493,468 - GFF3059 0.56 +0.3
493,468 - GFF3059 0.56 -0.5
493,468 - GFF3059 0.56 -0.6
493,893 + +0.2
493,893 + -0.5
493,893 + -2.5
493,893 + +0.2
493,894 - -0.4
493,899 + -0.8
493,899 + -2.1
493,899 + -0.7
493,899 + -0.3
493,899 + -0.2
493,900 - +0.1
493,900 - -0.3
493,900 - +0.2
493,900 - +0.7
493,912 + -1.6
493,913 - +0.4
494,441 + GFF3060 0.49 -0.9
494,441 + GFF3060 0.49 -0.6
494,442 - GFF3060 0.49 +0.8
494,480 + GFF3060 0.53 -1.5
494,522 + GFF3060 0.57 -0.5
494,522 + GFF3060 0.57 -0.5
494,523 - GFF3060 0.57 -1.0
494,591 + GFF3060 0.65 -1.1
494,754 - GFF3060 0.82 -0.5
494,754 - GFF3060 0.82 -0.6
494,807 + GFF3060 0.88 -0.4
494,807 + GFF3060 0.88 -0.1
494,807 + GFF3060 0.88 +1.2
494,808 - GFF3060 0.88 +0.4
494,808 - GFF3060 0.88 -0.9
495,246 + GFF3061 0.27 +0.2
495,309 + GFF3061 0.34 +0.1
495,310 - GFF3061 0.34 -0.5
495,417 + GFF3061 0.45 +0.4
495,417 + GFF3061 0.45 -0.4
495,417 + GFF3061 0.45 +0.8
495,417 + GFF3061 0.45 -0.1
495,418 - GFF3061 0.45 +0.3
495,418 - GFF3061 0.45 +0.4
495,418 - GFF3061 0.45 +1.0
495,522 + GFF3061 0.56 +0.5
495,522 + GFF3061 0.56 -0.3
495,537 + GFF3061 0.57 +0.4
495,537 + GFF3061 0.57 +0.4
495,538 - GFF3061 0.57 +0.4
495,538 - GFF3061 0.57 +1.1
495,621 + GFF3061 0.66 +1.0
495,622 - GFF3061 0.66 +0.8
495,622 - GFF3061 0.66 -1.0
495,720 + GFF3061 0.76 +1.2
495,729 + GFF3061 0.77 -0.6
495,729 + GFF3061 0.77 +0.6
495,729 + GFF3061 0.77 -0.6
495,729 + GFF3061 0.77 +0.2
495,730 - GFF3061 0.77 -1.1
495,730 - GFF3061 0.77 -0.2
495,738 + GFF3061 0.78 -0.4

Or see this region's nucleotide sequence