Strain Fitness in Variovorax sp. SCN45 around GFF3008

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF3006 and GFF3007 are separated by 165 nucleotidesGFF3007 and GFF3008 overlap by 14 nucleotidesGFF3008 and GFF3009 are separated by 16 nucleotides GFF3006 - hypothetical protein, at 434,352 to 435,473 GFF3006 GFF3007 - hypothetical protein, at 435,639 to 435,878 GFF3007 GFF3008 - hypothetical protein, at 435,865 to 436,215 GFF3008 GFF3009 - NADP-specific glutamate dehydrogenase (EC 1.4.1.4), at 436,232 to 437,575 GFF3009 Position (kb) 435 436 437Strain fitness (log2 ratio) -2 -1 0 1 2at 435.063 kb on + strand, within GFF3006at 435.063 kb on + strand, within GFF3006at 435.064 kb on - strand, within GFF3006at 435.064 kb on - strand, within GFF3006at 435.082 kb on + strand, within GFF3006at 435.082 kb on + strand, within GFF3006at 435.082 kb on + strand, within GFF3006at 435.082 kb on + strand, within GFF3006at 435.083 kb on - strand, within GFF3006at 435.083 kb on - strand, within GFF3006at 435.083 kb on - strand, within GFF3006at 435.083 kb on - strand, within GFF3006at 435.090 kb on + strand, within GFF3006at 435.297 kb on + strand, within GFF3006at 435.297 kb on + strand, within GFF3006at 435.297 kb on + strand, within GFF3006at 435.297 kb on + strand, within GFF3006at 435.298 kb on - strand, within GFF3006at 435.298 kb on - strand, within GFF3006at 435.298 kb on - strand, within GFF3006at 435.384 kb on + strandat 435.539 kb on + strandat 435.540 kb on - strandat 435.574 kb on - strandat 435.583 kb on + strandat 435.583 kb on + strandat 435.583 kb on + strandat 435.583 kb on + strandat 435.584 kb on - strandat 435.584 kb on - strandat 435.584 kb on - strandat 435.584 kb on - strandat 435.584 kb on - strandat 435.584 kb on - strandat 435.649 kb on - strandat 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.684 kb on + strand, within GFF3007at 435.685 kb on - strand, within GFF3007at 435.685 kb on - strand, within GFF3007at 435.685 kb on - strand, within GFF3007at 435.685 kb on - strand, within GFF3007at 435.685 kb on - strand, within GFF3007at 435.685 kb on - strand, within GFF3007at 435.685 kb on - strand, within GFF3007at 435.685 kb on - strand, within GFF3007at 435.746 kb on - strand, within GFF3007at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.986 kb on + strand, within GFF3008at 435.987 kb on - strand, within GFF3008at 435.987 kb on - strand, within GFF3008at 435.987 kb on - strand, within GFF3008at 435.987 kb on - strand, within GFF3008at 435.987 kb on - strand, within GFF3008at 435.987 kb on - strand, within GFF3008at 435.987 kb on - strand, within GFF3008at 435.987 kb on - strand, within GFF3008at 436.092 kb on - strand, within GFF3008at 436.092 kb on - strand, within GFF3008at 436.092 kb on - strand, within GFF3008at 436.129 kb on + strand, within GFF3008at 436.130 kb on + strand, within GFF3008at 436.130 kb on + strand, within GFF3008at 436.130 kb on + strand, within GFF3008at 436.131 kb on - strand, within GFF3008at 436.131 kb on - strand, within GFF3008at 436.228 kb on - strandat 436.302 kb on + strandat 436.302 kb on + strandat 436.302 kb on + strandat 436.302 kb on + strandat 436.302 kb on + strandat 436.302 kb on + strandat 436.482 kb on + strand, within GFF3009at 436.482 kb on + strand, within GFF3009at 436.482 kb on + strand, within GFF3009at 436.483 kb on - strand, within GFF3009at 436.483 kb on - strand, within GFF3009at 436.483 kb on - strand, within GFF3009at 436.483 kb on - strand, within GFF3009at 436.692 kb on + strand, within GFF3009at 436.693 kb on - strand, within GFF3009at 436.710 kb on + strand, within GFF3009at 436.710 kb on + strand, within GFF3009at 436.710 kb on + strand, within GFF3009at 436.710 kb on + strand, within GFF3009at 436.711 kb on - strand, within GFF3009at 436.711 kb on - strand, within GFF3009at 436.711 kb on - strand, within GFF3009at 436.780 kb on + strand, within GFF3009at 436.781 kb on - strand, within GFF3009at 436.842 kb on + strand, within GFF3009at 436.842 kb on + strand, within GFF3009at 436.842 kb on + strand, within GFF3009at 436.843 kb on - strand, within GFF3009at 436.843 kb on - strand, within GFF3009at 436.843 kb on - strand, within GFF3009at 436.843 kb on - strand, within GFF3009at 436.929 kb on + strand, within GFF3009at 436.929 kb on + strand, within GFF3009at 436.929 kb on + strand, within GFF3009at 436.930 kb on - strand, within GFF3009at 436.930 kb on - strand, within GFF3009

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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435,063 + GFF3006 0.63 -0.8
435,063 + GFF3006 0.63 +0.0
435,064 - GFF3006 0.63 +0.2
435,064 - GFF3006 0.63 +0.1
435,082 + GFF3006 0.65 -1.5
435,082 + GFF3006 0.65 -0.5
435,082 + GFF3006 0.65 +0.2
435,082 + GFF3006 0.65 +0.9
435,083 - GFF3006 0.65 +0.6
435,083 - GFF3006 0.65 -0.0
435,083 - GFF3006 0.65 -0.7
435,083 - GFF3006 0.65 -0.2
435,090 + GFF3006 0.66 -0.1
435,297 + GFF3006 0.84 -0.5
435,297 + GFF3006 0.84 +0.2
435,297 + GFF3006 0.84 -0.2
435,297 + GFF3006 0.84 +1.5
435,298 - GFF3006 0.84 -0.8
435,298 - GFF3006 0.84 +1.6
435,298 - GFF3006 0.84 +0.8
435,384 + -0.6
435,539 + -1.0
435,540 - -0.4
435,574 - -0.5
435,583 + -0.8
435,583 + -0.7
435,583 + -1.7
435,583 + -0.8
435,584 - +0.4
435,584 - +0.3
435,584 - -0.1
435,584 - -0.4
435,584 - -1.0
435,584 - -0.3
435,649 - -0.8
435,684 + GFF3007 0.19 -1.0
435,684 + GFF3007 0.19 +0.1
435,684 + GFF3007 0.19 -0.2
435,684 + GFF3007 0.19 -0.4
435,684 + GFF3007 0.19 -0.0
435,684 + GFF3007 0.19 -0.4
435,684 + GFF3007 0.19 +0.4
435,684 + GFF3007 0.19 +0.6
435,684 + GFF3007 0.19 +0.3
435,684 + GFF3007 0.19 -0.6
435,685 - GFF3007 0.19 +0.8
435,685 - GFF3007 0.19 +0.3
435,685 - GFF3007 0.19 -0.4
435,685 - GFF3007 0.19 -1.2
435,685 - GFF3007 0.19 -0.5
435,685 - GFF3007 0.19 -0.1
435,685 - GFF3007 0.19 +0.8
435,685 - GFF3007 0.19 +0.1
435,746 - GFF3007 0.45 -1.0
435,986 + GFF3008 0.34 -0.1
435,986 + GFF3008 0.34 -1.4
435,986 + GFF3008 0.34 -0.7
435,986 + GFF3008 0.34 +0.5
435,986 + GFF3008 0.34 -0.2
435,986 + GFF3008 0.34 -0.2
435,986 + GFF3008 0.34 -1.7
435,986 + GFF3008 0.34 -0.5
435,986 + GFF3008 0.34 +1.5
435,986 + GFF3008 0.34 -0.8
435,986 + GFF3008 0.34 +0.6
435,986 + GFF3008 0.34 -0.7
435,987 - GFF3008 0.35 -0.4
435,987 - GFF3008 0.35 -0.0
435,987 - GFF3008 0.35 -0.8
435,987 - GFF3008 0.35 -1.2
435,987 - GFF3008 0.35 -0.4
435,987 - GFF3008 0.35 -0.7
435,987 - GFF3008 0.35 +0.2
435,987 - GFF3008 0.35 +0.3
436,092 - GFF3008 0.65 -0.6
436,092 - GFF3008 0.65 -0.5
436,092 - GFF3008 0.65 +1.0
436,129 + GFF3008 0.75 -1.1
436,130 + GFF3008 0.75 +1.0
436,130 + GFF3008 0.75 -0.6
436,130 + GFF3008 0.75 +1.8
436,131 - GFF3008 0.76 -0.9
436,131 - GFF3008 0.76 -0.5
436,228 - -0.5
436,302 + -0.9
436,302 + -0.6
436,302 + -0.4
436,302 + -0.7
436,302 + +0.0
436,302 + +0.6
436,482 + GFF3009 0.19 +0.5
436,482 + GFF3009 0.19 -1.6
436,482 + GFF3009 0.19 -0.3
436,483 - GFF3009 0.19 +0.4
436,483 - GFF3009 0.19 +0.8
436,483 - GFF3009 0.19 -1.1
436,483 - GFF3009 0.19 -1.2
436,692 + GFF3009 0.34 +0.6
436,693 - GFF3009 0.34 -0.2
436,710 + GFF3009 0.36 -0.6
436,710 + GFF3009 0.36 +1.2
436,710 + GFF3009 0.36 -0.8
436,710 + GFF3009 0.36 -0.7
436,711 - GFF3009 0.36 -0.2
436,711 - GFF3009 0.36 +0.5
436,711 - GFF3009 0.36 -0.8
436,780 + GFF3009 0.41 -0.6
436,781 - GFF3009 0.41 -0.2
436,842 + GFF3009 0.45 -0.3
436,842 + GFF3009 0.45 -0.1
436,842 + GFF3009 0.45 +0.4
436,843 - GFF3009 0.45 -0.7
436,843 - GFF3009 0.45 -0.1
436,843 - GFF3009 0.45 -1.2
436,843 - GFF3009 0.45 -0.5
436,929 + GFF3009 0.52 -0.4
436,929 + GFF3009 0.52 -0.8
436,929 + GFF3009 0.52 -0.5
436,930 - GFF3009 0.52 -2.0
436,930 - GFF3009 0.52 -1.4

Or see this region's nucleotide sequence