Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2966 and GFF2967 overlap by 8 nucleotides GFF2967 and GFF2968 are separated by 36 nucleotides GFF2968 and GFF2969 are separated by 11 nucleotides
GFF2966 - Enoyl-CoA hydratase (EC 4.2.1.17), at 397,583 to 398,395
GFF2966
GFF2967 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 398,388 to 399,137
GFF2967
GFF2968 - MaoC-like dehydratase, at 399,174 to 400,043
GFF2968
GFF2969 - acyl-CoA synthetase (NDP forming type), at 400,055 to 402,211
GFF2969
Position (kb) 399
400
401 Strain fitness (log2 ratio) -2
-1
0
1
2 at 398.395 kb on + strand at 398.395 kb on + strand at 398.396 kb on - strand at 398.396 kb on - strand at 398.396 kb on - strand at 398.542 kb on + strand, within GFF2967 at 398.542 kb on + strand, within GFF2967 at 398.542 kb on + strand, within GFF2967 at 398.542 kb on + strand, within GFF2967 at 398.542 kb on + strand, within GFF2967 at 398.543 kb on - strand, within GFF2967 at 398.543 kb on - strand, within GFF2967 at 398.674 kb on + strand, within GFF2967 at 398.675 kb on - strand, within GFF2967 at 398.675 kb on - strand, within GFF2967 at 398.675 kb on - strand, within GFF2967 at 398.675 kb on - strand, within GFF2967 at 398.675 kb on - strand, within GFF2967 at 398.675 kb on - strand, within GFF2967 at 398.880 kb on - strand, within GFF2967 at 398.880 kb on - strand, within GFF2967 at 398.880 kb on - strand, within GFF2967 at 398.880 kb on - strand, within GFF2967 at 399.344 kb on - strand, within GFF2968 at 399.482 kb on - strand, within GFF2968 at 399.901 kb on + strand, within GFF2968 at 399.902 kb on - strand, within GFF2968 at 399.907 kb on + strand, within GFF2968 at 399.907 kb on + strand, within GFF2968 at 399.907 kb on + strand, within GFF2968 at 399.907 kb on + strand, within GFF2968 at 399.908 kb on - strand, within GFF2968 at 399.908 kb on - strand, within GFF2968 at 399.908 kb on - strand, within GFF2968 at 399.961 kb on + strand at 399.961 kb on + strand at 399.961 kb on + strand at 399.962 kb on - strand at 399.962 kb on - strand at 399.983 kb on + strand at 399.985 kb on + strand at 399.985 kb on + strand at 399.985 kb on + strand at 399.985 kb on + strand at 399.985 kb on + strand at 399.985 kb on + strand at 399.985 kb on + strand at 399.985 kb on + strand at 399.986 kb on - strand at 399.986 kb on - strand at 399.986 kb on - strand at 399.986 kb on - strand at 399.986 kb on - strand at 399.986 kb on - strand at 399.986 kb on - strand at 400.038 kb on - strand at 400.603 kb on + strand, within GFF2969 at 400.607 kb on + strand, within GFF2969 at 400.607 kb on + strand, within GFF2969 at 400.607 kb on + strand, within GFF2969 at 400.607 kb on + strand, within GFF2969 at 400.608 kb on - strand, within GFF2969 at 400.875 kb on + strand, within GFF2969 at 400.998 kb on + strand, within GFF2969 at 400.999 kb on - strand, within GFF2969 at 400.999 kb on - strand, within GFF2969 at 400.999 kb on - strand, within GFF2969 at 400.999 kb on - strand, within GFF2969 at 400.999 kb on - strand, within GFF2969
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 398,395 + +0.1 398,395 + -0.6 398,396 - +1.5 398,396 - +0.6 398,396 - +0.7 398,542 + GFF2967 0.21 +0.1 398,542 + GFF2967 0.21 +1.0 398,542 + GFF2967 0.21 -0.5 398,542 + GFF2967 0.21 +0.4 398,542 + GFF2967 0.21 +0.5 398,543 - GFF2967 0.21 -0.3 398,543 - GFF2967 0.21 +1.5 398,674 + GFF2967 0.38 +0.6 398,675 - GFF2967 0.38 -0.0 398,675 - GFF2967 0.38 -0.5 398,675 - GFF2967 0.38 -0.2 398,675 - GFF2967 0.38 -1.0 398,675 - GFF2967 0.38 -1.4 398,675 - GFF2967 0.38 -0.3 398,880 - GFF2967 0.66 +0.3 398,880 - GFF2967 0.66 -0.5 398,880 - GFF2967 0.66 -1.9 398,880 - GFF2967 0.66 -1.9 399,344 - GFF2968 0.20 -0.1 399,482 - GFF2968 0.35 -0.5 399,901 + GFF2968 0.84 -0.2 399,902 - GFF2968 0.84 -0.1 399,907 + GFF2968 0.84 +1.2 399,907 + GFF2968 0.84 -0.2 399,907 + GFF2968 0.84 -0.3 399,907 + GFF2968 0.84 +0.7 399,908 - GFF2968 0.84 -0.3 399,908 - GFF2968 0.84 +0.1 399,908 - GFF2968 0.84 +0.2 399,961 + -0.2 399,961 + +0.3 399,961 + -0.3 399,962 - -0.0 399,962 - +0.3 399,983 + -0.3 399,985 + +1.8 399,985 + -0.1 399,985 + +0.1 399,985 + -0.9 399,985 + -0.5 399,985 + -0.3 399,985 + +0.6 399,985 + +0.2 399,986 - +0.9 399,986 - +0.3 399,986 - -1.0 399,986 - +0.4 399,986 - +0.1 399,986 - -2.0 399,986 - -0.5 400,038 - -0.5 400,603 + GFF2969 0.25 +0.6 400,607 + GFF2969 0.26 +2.4 400,607 + GFF2969 0.26 -1.1 400,607 + GFF2969 0.26 -0.3 400,607 + GFF2969 0.26 -0.8 400,608 - GFF2969 0.26 -0.5 400,875 + GFF2969 0.38 +0.9 400,998 + GFF2969 0.44 -0.3 400,999 - GFF2969 0.44 -1.4 400,999 - GFF2969 0.44 -0.7 400,999 - GFF2969 0.44 +0.4 400,999 - GFF2969 0.44 +0.6 400,999 - GFF2969 0.44 +0.7
Or see this region's nucleotide sequence