Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2954 and GFF2955 are separated by 143 nucleotides GFF2955 and GFF2956 overlap by 4 nucleotides GFF2956 and GFF2957 overlap by 4 nucleotides
GFF2954 - 6-phosphogluconate dehydrogenase, decarboxylating (EC 1.1.1.44), at 377,188 to 378,609
GFF2954
GFF2955 - hypothetical protein, at 378,753 to 380,450
GFF2955
GFF2956 - Uncharacterized protein YfaT, at 380,447 to 381,133
GFF2956
GFF2957 - UPF0192 protein YfaS, at 381,130 to 385,842
GFF2957
Position (kb) 378
379
380
381 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 377.758 kb on + strand, within GFF2954 at 377.758 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.788 kb on + strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.789 kb on - strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.872 kb on + strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 377.873 kb on - strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.163 kb on + strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.164 kb on - strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.184 kb on + strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.185 kb on - strand, within GFF2954 at 378.466 kb on + strand, within GFF2954 at 378.467 kb on - strand at 378.467 kb on - strand at 378.467 kb on - strand at 378.469 kb on + strand at 378.469 kb on + strand at 378.469 kb on + strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.470 kb on - strand at 378.478 kb on + strand at 378.478 kb on + strand at 378.478 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.544 kb on + strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.545 kb on - strand at 378.897 kb on + strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.898 kb on - strand at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.987 kb on + strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.988 kb on - strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.990 kb on + strand, within GFF2955 at 378.991 kb on - strand, within GFF2955 at 378.991 kb on - strand, within GFF2955 at 378.992 kb on - strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.044 kb on + strand, within GFF2955 at 379.045 kb on - strand, within GFF2955 at 379.143 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.272 kb on + strand, within GFF2955 at 379.849 kb on - strand, within GFF2955 at 379.849 kb on - strand, within GFF2955 at 380.040 kb on + strand, within GFF2955 at 380.040 kb on + strand, within GFF2955 at 380.040 kb on + strand, within GFF2955 at 380.041 kb on - strand, within GFF2955 at 380.041 kb on - strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.064 kb on + strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.065 kb on - strand, within GFF2955 at 380.843 kb on + strand, within GFF2956 at 380.843 kb on + strand, within GFF2956 at 380.843 kb on + strand, within GFF2956 at 380.843 kb on + strand, within GFF2956 at 380.844 kb on - strand, within GFF2956 at 380.844 kb on - strand, within GFF2956 at 380.844 kb on - strand, within GFF2956 at 380.930 kb on + strand, within GFF2956 at 380.931 kb on - strand, within GFF2956 at 380.931 kb on - strand, within GFF2956 at 380.931 kb on - strand, within GFF2956 at 380.931 kb on - strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.975 kb on + strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.976 kb on - strand, within GFF2956 at 380.984 kb on + strand, within GFF2956 at 380.985 kb on - strand, within GFF2956 at 381.280 kb on + strand at 381.406 kb on + strand at 381.406 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 377,758 + GFF2954 0.40 -1.0 377,758 + GFF2954 0.40 -0.2 377,788 + GFF2954 0.42 +0.0 377,788 + GFF2954 0.42 -0.1 377,788 + GFF2954 0.42 -0.3 377,788 + GFF2954 0.42 -0.1 377,788 + GFF2954 0.42 +1.0 377,788 + GFF2954 0.42 -0.2 377,788 + GFF2954 0.42 -0.2 377,788 + GFF2954 0.42 -1.0 377,788 + GFF2954 0.42 +0.6 377,789 - GFF2954 0.42 +0.3 377,789 - GFF2954 0.42 +0.5 377,789 - GFF2954 0.42 +0.6 377,789 - GFF2954 0.42 -0.7 377,789 - GFF2954 0.42 -0.5 377,872 + GFF2954 0.48 -2.0 377,872 + GFF2954 0.48 +2.0 377,872 + GFF2954 0.48 +0.6 377,872 + GFF2954 0.48 +0.9 377,872 + GFF2954 0.48 +1.8 377,873 - GFF2954 0.48 +0.3 377,873 - GFF2954 0.48 -0.3 377,873 - GFF2954 0.48 +0.2 377,873 - GFF2954 0.48 +0.8 378,163 + GFF2954 0.69 +0.2 378,163 + GFF2954 0.69 +0.0 378,163 + GFF2954 0.69 -0.9 378,163 + GFF2954 0.69 -0.3 378,163 + GFF2954 0.69 -0.7 378,163 + GFF2954 0.69 -0.5 378,163 + GFF2954 0.69 +0.0 378,164 - GFF2954 0.69 -0.8 378,164 - GFF2954 0.69 +0.3 378,164 - GFF2954 0.69 -0.7 378,164 - GFF2954 0.69 +0.2 378,164 - GFF2954 0.69 +1.0 378,164 - GFF2954 0.69 +0.8 378,164 - GFF2954 0.69 -0.2 378,184 + GFF2954 0.70 -0.5 378,184 + GFF2954 0.70 +0.2 378,184 + GFF2954 0.70 +0.1 378,184 + GFF2954 0.70 -0.3 378,185 - GFF2954 0.70 +0.2 378,185 - GFF2954 0.70 -0.2 378,185 - GFF2954 0.70 -0.1 378,185 - GFF2954 0.70 -0.5 378,466 + GFF2954 0.90 +0.1 378,467 - -0.5 378,467 - -0.7 378,467 - -0.4 378,469 + -0.1 378,469 + -0.4 378,469 + -0.7 378,470 - -1.2 378,470 - +0.5 378,470 - +0.9 378,470 - +0.4 378,478 + -0.3 378,478 + -0.7 378,478 + -0.6 378,544 + -1.4 378,544 + -0.2 378,544 + -0.4 378,544 + +0.5 378,544 + -0.0 378,544 + -1.2 378,544 + +0.2 378,544 + -0.8 378,544 + -0.5 378,544 + -0.1 378,544 + +1.0 378,544 + +1.5 378,545 - +2.0 378,545 - -0.1 378,545 - +0.8 378,545 - +0.6 378,545 - -0.3 378,545 - -2.2 378,545 - -0.2 378,545 - -0.7 378,545 - +0.1 378,545 - -0.8 378,545 - -0.7 378,545 - -0.2 378,897 + -0.4 378,898 - -0.0 378,898 - +1.8 378,898 - -0.2 378,898 - -0.4 378,987 + GFF2955 0.14 -0.3 378,987 + GFF2955 0.14 -0.1 378,987 + GFF2955 0.14 -0.9 378,987 + GFF2955 0.14 +0.8 378,987 + GFF2955 0.14 -1.2 378,987 + GFF2955 0.14 +0.6 378,987 + GFF2955 0.14 -0.2 378,988 - GFF2955 0.14 -0.7 378,988 - GFF2955 0.14 -0.5 378,988 - GFF2955 0.14 -0.1 378,988 - GFF2955 0.14 -0.3 378,988 - GFF2955 0.14 +0.5 378,990 + GFF2955 0.14 -1.3 378,990 + GFF2955 0.14 -1.2 378,990 + GFF2955 0.14 +0.8 378,990 + GFF2955 0.14 -1.4 378,991 - GFF2955 0.14 -0.8 378,991 - GFF2955 0.14 -0.3 378,992 - GFF2955 0.14 +0.1 379,044 + GFF2955 0.17 -1.1 379,044 + GFF2955 0.17 -0.5 379,044 + GFF2955 0.17 -0.1 379,044 + GFF2955 0.17 +0.6 379,044 + GFF2955 0.17 -0.6 379,045 - GFF2955 0.17 -1.3 379,143 + GFF2955 0.23 -0.1 379,272 + GFF2955 0.31 -0.2 379,272 + GFF2955 0.31 -0.2 379,272 + GFF2955 0.31 +0.1 379,272 + GFF2955 0.31 +1.8 379,849 - GFF2955 0.65 -1.0 379,849 - GFF2955 0.65 -1.0 380,040 + GFF2955 0.76 +0.6 380,040 + GFF2955 0.76 -1.1 380,040 + GFF2955 0.76 -1.1 380,041 - GFF2955 0.76 -0.5 380,041 - GFF2955 0.76 -0.4 380,064 + GFF2955 0.77 +0.1 380,064 + GFF2955 0.77 -0.5 380,064 + GFF2955 0.77 -0.2 380,064 + GFF2955 0.77 +1.0 380,064 + GFF2955 0.77 -0.9 380,064 + GFF2955 0.77 -0.6 380,065 - GFF2955 0.77 +0.7 380,065 - GFF2955 0.77 -0.2 380,065 - GFF2955 0.77 -0.6 380,065 - GFF2955 0.77 -0.5 380,065 - GFF2955 0.77 -0.2 380,843 + GFF2956 0.58 -0.0 380,843 + GFF2956 0.58 +0.1 380,843 + GFF2956 0.58 -0.3 380,843 + GFF2956 0.58 +1.4 380,844 - GFF2956 0.58 +0.3 380,844 - GFF2956 0.58 -1.2 380,844 - GFF2956 0.58 +0.6 380,930 + GFF2956 0.70 -3.4 380,931 - GFF2956 0.70 +0.2 380,931 - GFF2956 0.70 -0.5 380,931 - GFF2956 0.70 -1.3 380,931 - GFF2956 0.70 +0.0 380,975 + GFF2956 0.77 +2.2 380,975 + GFF2956 0.77 -0.8 380,975 + GFF2956 0.77 -0.0 380,975 + GFF2956 0.77 +0.8 380,975 + GFF2956 0.77 +1.0 380,976 - GFF2956 0.77 +0.3 380,976 - GFF2956 0.77 +0.6 380,976 - GFF2956 0.77 +0.2 380,976 - GFF2956 0.77 +0.9 380,976 - GFF2956 0.77 -0.8 380,976 - GFF2956 0.77 -1.9 380,976 - GFF2956 0.77 -0.9 380,976 - GFF2956 0.77 +0.5 380,976 - GFF2956 0.77 -0.3 380,976 - GFF2956 0.77 -0.9 380,976 - GFF2956 0.77 +0.0 380,976 - GFF2956 0.77 +0.1 380,976 - GFF2956 0.77 -0.2 380,976 - GFF2956 0.77 +0.0 380,976 - GFF2956 0.77 +0.2 380,976 - GFF2956 0.77 +0.7 380,984 + GFF2956 0.78 -0.5 380,985 - GFF2956 0.78 +1.0 381,280 + -1.0 381,406 + -0.5 381,406 + -0.8
Or see this region's nucleotide sequence