Strain Fitness in Variovorax sp. SCN45 around GFF2923

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2921 and GFF2922 are separated by 22 nucleotidesGFF2922 and GFF2923 are separated by 50 nucleotidesGFF2923 and GFF2924 are separated by 25 nucleotides GFF2921 - D-galactarate dehydratase (EC 4.2.1.42), at 347,722 to 349,302 GFF2921 GFF2922 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 349,325 to 350,086 GFF2922 GFF2923 - Tripartite tricarboxylate transporter TctC family, at 350,137 to 351,117 GFF2923 GFF2924 - BUG/TctC family periplasmic protein, at 351,143 to 352,135 GFF2924 Position (kb) 350 351 352Strain fitness (log2 ratio) -2 -1 0 1 2at 349.184 kb on + strandat 349.184 kb on + strandat 349.184 kb on + strandat 349.184 kb on + strandat 349.184 kb on + strandat 349.185 kb on - strandat 349.185 kb on - strandat 349.433 kb on + strand, within GFF2922at 349.433 kb on + strand, within GFF2922at 349.433 kb on + strand, within GFF2922at 349.434 kb on - strand, within GFF2922at 349.790 kb on + strand, within GFF2922at 349.796 kb on + strand, within GFF2922at 349.796 kb on + strand, within GFF2922at 349.797 kb on - strand, within GFF2922at 349.797 kb on - strand, within GFF2922at 349.797 kb on - strand, within GFF2922at 350.009 kb on + strand, within GFF2922at 350.009 kb on + strand, within GFF2922at 350.009 kb on + strand, within GFF2922at 350.009 kb on + strand, within GFF2922at 350.010 kb on - strandat 350.010 kb on - strandat 350.010 kb on - strandat 350.010 kb on - strandat 350.010 kb on - strandat 350.036 kb on + strandat 350.037 kb on - strandat 350.037 kb on - strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.075 kb on + strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.076 kb on - strandat 350.236 kb on + strand, within GFF2923at 350.419 kb on + strand, within GFF2923at 350.419 kb on + strand, within GFF2923at 350.419 kb on + strand, within GFF2923at 350.420 kb on - strand, within GFF2923at 350.420 kb on - strand, within GFF2923at 350.485 kb on + strand, within GFF2923at 350.485 kb on + strand, within GFF2923at 350.557 kb on + strand, within GFF2923at 350.557 kb on + strand, within GFF2923at 350.558 kb on - strand, within GFF2923at 350.558 kb on - strand, within GFF2923at 350.558 kb on - strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.785 kb on + strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 350.786 kb on - strand, within GFF2923at 351.022 kb on + strandat 351.022 kb on + strandat 351.022 kb on + strandat 351.023 kb on - strandat 351.028 kb on + strandat 351.028 kb on + strandat 351.028 kb on + strandat 351.028 kb on + strandat 351.029 kb on - strandat 351.029 kb on - strandat 351.076 kb on + strandat 351.251 kb on + strand, within GFF2924at 351.251 kb on + strand, within GFF2924at 351.251 kb on + strand, within GFF2924at 351.251 kb on + strand, within GFF2924at 351.251 kb on + strand, within GFF2924at 351.252 kb on - strand, within GFF2924at 351.252 kb on - strand, within GFF2924at 351.252 kb on - strand, within GFF2924at 351.464 kb on + strand, within GFF2924at 351.464 kb on + strand, within GFF2924at 351.465 kb on - strand, within GFF2924at 351.465 kb on - strand, within GFF2924at 351.479 kb on + strand, within GFF2924at 351.479 kb on + strand, within GFF2924at 351.480 kb on - strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.560 kb on + strand, within GFF2924at 351.561 kb on - strand, within GFF2924at 351.561 kb on - strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.671 kb on + strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.672 kb on - strand, within GFF2924at 351.704 kb on + strand, within GFF2924at 351.704 kb on + strand, within GFF2924at 351.704 kb on + strand, within GFF2924at 351.704 kb on + strand, within GFF2924at 351.705 kb on - strand, within GFF2924at 351.705 kb on - strand, within GFF2924

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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349,184 + -0.1
349,184 + +0.6
349,184 + -0.2
349,184 + -0.3
349,184 + -2.1
349,185 - +0.2
349,185 - +0.3
349,433 + GFF2922 0.14 +0.6
349,433 + GFF2922 0.14 -0.3
349,433 + GFF2922 0.14 +0.1
349,434 - GFF2922 0.14 +0.2
349,790 + GFF2922 0.61 +0.4
349,796 + GFF2922 0.62 -0.5
349,796 + GFF2922 0.62 +0.3
349,797 - GFF2922 0.62 -0.8
349,797 - GFF2922 0.62 +0.1
349,797 - GFF2922 0.62 -0.8
350,009 + GFF2922 0.90 -0.7
350,009 + GFF2922 0.90 -0.5
350,009 + GFF2922 0.90 -0.4
350,009 + GFF2922 0.90 -1.0
350,010 - +2.6
350,010 - +0.3
350,010 - +0.6
350,010 - -0.2
350,010 - -0.1
350,036 + -0.3
350,037 - +0.1
350,037 - -2.6
350,075 + -1.1
350,075 + +0.4
350,075 + -0.6
350,075 + -0.1
350,075 + -0.5
350,075 + +0.4
350,075 + +0.0
350,075 + -1.1
350,075 + +0.3
350,075 + -0.3
350,075 + -0.9
350,075 + -0.6
350,075 + +1.2
350,075 + -0.5
350,075 + +0.4
350,076 - +0.0
350,076 - -1.8
350,076 - +0.0
350,076 - +0.1
350,076 - -0.2
350,076 - +1.2
350,076 - +0.5
350,076 - -0.4
350,076 - -0.0
350,076 - +0.8
350,236 + GFF2923 0.10 +0.7
350,419 + GFF2923 0.29 +0.7
350,419 + GFF2923 0.29 +0.3
350,419 + GFF2923 0.29 -0.2
350,420 - GFF2923 0.29 -0.3
350,420 - GFF2923 0.29 +0.3
350,485 + GFF2923 0.35 +1.0
350,485 + GFF2923 0.35 +0.7
350,557 + GFF2923 0.43 -0.8
350,557 + GFF2923 0.43 +0.3
350,558 - GFF2923 0.43 -0.5
350,558 - GFF2923 0.43 +0.5
350,558 - GFF2923 0.43 +0.1
350,785 + GFF2923 0.66 -0.2
350,785 + GFF2923 0.66 +0.2
350,785 + GFF2923 0.66 -0.2
350,785 + GFF2923 0.66 -1.2
350,785 + GFF2923 0.66 -0.0
350,785 + GFF2923 0.66 +0.6
350,785 + GFF2923 0.66 -1.0
350,785 + GFF2923 0.66 +0.2
350,785 + GFF2923 0.66 -0.4
350,785 + GFF2923 0.66 -0.2
350,786 - GFF2923 0.66 -1.0
350,786 - GFF2923 0.66 -0.2
350,786 - GFF2923 0.66 -0.3
350,786 - GFF2923 0.66 +0.8
350,786 - GFF2923 0.66 -1.5
350,786 - GFF2923 0.66 -1.0
351,022 + +0.4
351,022 + -0.5
351,022 + -0.1
351,023 - +0.2
351,028 + +1.0
351,028 + +1.0
351,028 + +0.5
351,028 + -0.3
351,029 - +0.8
351,029 - -0.7
351,076 + -0.1
351,251 + GFF2924 0.11 +0.1
351,251 + GFF2924 0.11 -0.8
351,251 + GFF2924 0.11 -0.6
351,251 + GFF2924 0.11 -2.0
351,251 + GFF2924 0.11 -2.3
351,252 - GFF2924 0.11 -2.5
351,252 - GFF2924 0.11 -0.5
351,252 - GFF2924 0.11 +0.5
351,464 + GFF2924 0.32 +0.0
351,464 + GFF2924 0.32 -0.5
351,465 - GFF2924 0.32 -0.5
351,465 - GFF2924 0.32 +0.3
351,479 + GFF2924 0.34 -0.2
351,479 + GFF2924 0.34 -1.0
351,480 - GFF2924 0.34 -0.5
351,560 + GFF2924 0.42 +0.1
351,560 + GFF2924 0.42 -0.6
351,560 + GFF2924 0.42 -0.5
351,560 + GFF2924 0.42 +0.1
351,560 + GFF2924 0.42 +0.4
351,560 + GFF2924 0.42 -0.6
351,561 - GFF2924 0.42 -0.1
351,561 - GFF2924 0.42 +0.2
351,671 + GFF2924 0.53 +0.9
351,671 + GFF2924 0.53 -0.1
351,671 + GFF2924 0.53 +0.2
351,671 + GFF2924 0.53 -0.6
351,671 + GFF2924 0.53 +0.2
351,672 - GFF2924 0.53 -0.5
351,672 - GFF2924 0.53 -0.9
351,672 - GFF2924 0.53 -0.5
351,672 - GFF2924 0.53 +0.4
351,672 - GFF2924 0.53 -0.9
351,672 - GFF2924 0.53 -0.1
351,704 + GFF2924 0.56 -0.5
351,704 + GFF2924 0.56 -0.5
351,704 + GFF2924 0.56 +0.7
351,704 + GFF2924 0.56 -2.1
351,705 - GFF2924 0.57 -0.5
351,705 - GFF2924 0.57 -0.5

Or see this region's nucleotide sequence