Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2916 and GFF2917 overlap by 11 nucleotides GFF2917 and GFF2918 are separated by 56 nucleotides GFF2918 and GFF2919 are separated by 142 nucleotides GFF2919 and GFF2920 overlap by 10 nucleotides
GFF2916 - UDP-glucose 4-epimerase (EC 5.1.3.2), at 342,973 to 343,794
GFF2916
GFF2917 - Gluconolactonase (EC 3.1.1.17), at 343,784 to 344,674
GFF2917
GFF2918 - TRAP-type C4-dicarboxylate transport system, periplasmic component, at 344,731 to 345,723
GFF2918
GFF2919 - no description, at 345,866 to 346,360
GFF2919
GFF2920 - TRAP-type C4-dicarboxylate transport system, large permease component, at 346,351 to 347,703
GFF2920
Position (kb) 344
345
346 Strain fitness (log2 ratio) -2
-1
0
1
2 at 343.745 kb on - strand at 343.745 kb on - strand at 344.180 kb on + strand, within GFF2917 at 344.180 kb on + strand, within GFF2917 at 344.180 kb on + strand, within GFF2917 at 344.181 kb on - strand, within GFF2917 at 344.181 kb on - strand, within GFF2917 at 344.181 kb on - strand, within GFF2917 at 344.187 kb on - strand, within GFF2917 at 344.187 kb on - strand, within GFF2917 at 344.276 kb on + strand, within GFF2917 at 344.277 kb on - strand, within GFF2917 at 344.277 kb on - strand, within GFF2917 at 344.741 kb on + strand at 344.742 kb on - strand at 344.742 kb on - strand at 345.100 kb on + strand, within GFF2918 at 345.101 kb on - strand, within GFF2918 at 345.101 kb on - strand, within GFF2918 at 345.166 kb on + strand, within GFF2918 at 345.167 kb on - strand, within GFF2918 at 345.167 kb on - strand, within GFF2918 at 345.167 kb on - strand, within GFF2918 at 345.190 kb on + strand, within GFF2918 at 345.367 kb on + strand, within GFF2918 at 345.367 kb on + strand, within GFF2918 at 345.368 kb on - strand, within GFF2918 at 345.368 kb on - strand, within GFF2918 at 345.377 kb on - strand, within GFF2918 at 345.535 kb on + strand, within GFF2918 at 345.535 kb on + strand, within GFF2918 at 345.535 kb on + strand, within GFF2918 at 345.536 kb on - strand, within GFF2918 at 345.536 kb on - strand, within GFF2918 at 345.536 kb on - strand, within GFF2918 at 345.536 kb on - strand, within GFF2918 at 345.914 kb on + strand at 345.914 kb on + strand at 345.915 kb on - strand at 345.915 kb on - strand at 345.915 kb on - strand at 345.915 kb on - strand at 345.915 kb on - strand at 345.977 kb on + strand, within GFF2919 at 346.001 kb on + strand, within GFF2919 at 346.001 kb on + strand, within GFF2919 at 346.002 kb on - strand, within GFF2919 at 346.148 kb on + strand, within GFF2919 at 346.149 kb on - strand, within GFF2919 at 346.149 kb on - strand, within GFF2919 at 346.259 kb on + strand, within GFF2919 at 346.259 kb on + strand, within GFF2919
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 343,745 - +0.4 343,745 - +0.8 344,180 + GFF2917 0.44 -1.2 344,180 + GFF2917 0.44 -0.5 344,180 + GFF2917 0.44 +0.4 344,181 - GFF2917 0.45 -0.1 344,181 - GFF2917 0.45 -2.1 344,181 - GFF2917 0.45 -1.4 344,187 - GFF2917 0.45 +0.0 344,187 - GFF2917 0.45 -0.4 344,276 + GFF2917 0.55 -0.1 344,277 - GFF2917 0.55 +0.2 344,277 - GFF2917 0.55 +0.2 344,741 + +0.1 344,742 - -0.3 344,742 - -0.2 345,100 + GFF2918 0.37 -1.2 345,101 - GFF2918 0.37 +0.0 345,101 - GFF2918 0.37 -0.4 345,166 + GFF2918 0.44 +0.7 345,167 - GFF2918 0.44 +0.2 345,167 - GFF2918 0.44 +0.6 345,167 - GFF2918 0.44 +1.6 345,190 + GFF2918 0.46 -0.2 345,367 + GFF2918 0.64 -1.5 345,367 + GFF2918 0.64 +0.2 345,368 - GFF2918 0.64 +2.1 345,368 - GFF2918 0.64 -0.2 345,377 - GFF2918 0.65 +1.6 345,535 + GFF2918 0.81 +0.1 345,535 + GFF2918 0.81 +0.5 345,535 + GFF2918 0.81 +1.2 345,536 - GFF2918 0.81 -0.4 345,536 - GFF2918 0.81 +0.8 345,536 - GFF2918 0.81 -0.2 345,536 - GFF2918 0.81 -1.0 345,914 + -0.4 345,914 + -0.6 345,915 - -0.0 345,915 - +0.0 345,915 - -0.5 345,915 - -0.1 345,915 - -1.2 345,977 + GFF2919 0.22 -0.2 346,001 + GFF2919 0.27 -1.3 346,001 + GFF2919 0.27 -0.7 346,002 - GFF2919 0.27 +2.2 346,148 + GFF2919 0.57 +0.1 346,149 - GFF2919 0.57 +0.3 346,149 - GFF2919 0.57 +0.2 346,259 + GFF2919 0.79 +0.1 346,259 + GFF2919 0.79 +0.5
Or see this region's nucleotide sequence