Strain Fitness in Variovorax sp. SCN45 around GFF2843

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF2842 and GFF2843 are separated by 4 nucleotidesGFF2843 and GFF2844 are separated by 11 nucleotidesGFF2844 and GFF2845 are separated by 1 nucleotides GFF2842 - RNA polymerase sigma factor RpoS, at 267,106 to 268,152 GFF2842 GFF2843 - Murein hydrolase activator NlpD, at 268,157 to 269,068 GFF2843 GFF2844 - Protein-L-isoaspartate O-methyltransferase (EC 2.1.1.77), at 269,080 to 269,853 GFF2844 GFF2845 - 5'-nucleotidase SurE (EC 3.1.3.5), at 269,855 to 270,613 GFF2845 Position (kb) 268 269 270Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 267.261 kb on - strand, within GFF2842at 267.683 kb on + strand, within GFF2842at 267.683 kb on + strand, within GFF2842at 267.683 kb on + strand, within GFF2842at 267.684 kb on - strand, within GFF2842at 267.684 kb on - strand, within GFF2842at 267.684 kb on - strand, within GFF2842at 267.791 kb on + strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.792 kb on - strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.887 kb on + strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.888 kb on - strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.935 kb on + strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 267.936 kb on - strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.033 kb on + strand, within GFF2842at 268.034 kb on - strand, within GFF2842at 268.034 kb on - strand, within GFF2842at 268.034 kb on - strand, within GFF2842at 268.034 kb on - strand, within GFF2842at 268.173 kb on + strandat 268.173 kb on + strandat 268.173 kb on + strandat 268.173 kb on + strandat 268.174 kb on - strandat 268.174 kb on - strandat 268.174 kb on - strandat 268.174 kb on - strandat 268.320 kb on + strand, within GFF2843at 268.320 kb on + strand, within GFF2843at 268.320 kb on + strand, within GFF2843at 268.321 kb on - strand, within GFF2843at 268.321 kb on - strand, within GFF2843at 268.321 kb on - strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.332 kb on + strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.333 kb on - strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.392 kb on + strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.393 kb on - strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.452 kb on + strand, within GFF2843at 268.453 kb on - strand, within GFF2843at 268.453 kb on - strand, within GFF2843at 268.453 kb on - strand, within GFF2843at 268.453 kb on - strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.459 kb on + strand, within GFF2843at 268.460 kb on - strand, within GFF2843at 268.460 kb on - strand, within GFF2843at 268.460 kb on - strand, within GFF2843at 268.460 kb on - strand, within GFF2843at 268.696 kb on + strand, within GFF2843at 268.718 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.845 kb on + strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.846 kb on - strand, within GFF2843at 268.848 kb on + strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.849 kb on - strand, within GFF2843at 268.863 kb on + strand, within GFF2843at 268.864 kb on - strand, within GFF2843at 268.864 kb on - strand, within GFF2843at 269.059 kb on + strandat 269.060 kb on - strandat 269.073 kb on + strandat 269.073 kb on + strandat 269.074 kb on - strandat 269.285 kb on + strand, within GFF2844at 269.285 kb on + strand, within GFF2844at 269.286 kb on - strand, within GFF2844at 269.286 kb on - strand, within GFF2844at 269.303 kb on + strand, within GFF2844at 269.303 kb on + strand, within GFF2844at 269.408 kb on + strand, within GFF2844at 269.408 kb on + strand, within GFF2844at 269.408 kb on + strand, within GFF2844at 269.408 kb on + strand, within GFF2844at 269.408 kb on + strand, within GFF2844at 269.408 kb on + strand, within GFF2844at 269.447 kb on + strand, within GFF2844at 269.448 kb on - strand, within GFF2844at 269.534 kb on - strand, within GFF2844at 269.603 kb on + strand, within GFF2844at 269.603 kb on + strand, within GFF2844at 269.603 kb on + strand, within GFF2844at 269.603 kb on + strand, within GFF2844at 269.603 kb on + strand, within GFF2844at 269.604 kb on - strand, within GFF2844at 269.604 kb on - strand, within GFF2844at 269.604 kb on - strand, within GFF2844at 269.604 kb on - strand, within GFF2844at 269.924 kb on + strandat 269.924 kb on + strandat 269.924 kb on + strandat 269.924 kb on + strandat 269.924 kb on + strandat 269.924 kb on + strandat 269.924 kb on + strandat 269.924 kb on + strandat 269.925 kb on - strandat 269.925 kb on - strandat 269.925 kb on - strandat 269.925 kb on - strandat 269.925 kb on - strandat 270.015 kb on + strand, within GFF2845at 270.015 kb on + strand, within GFF2845at 270.015 kb on + strand, within GFF2845at 270.015 kb on + strand, within GFF2845at 270.015 kb on + strand, within GFF2845at 270.015 kb on + strand, within GFF2845at 270.015 kb on + strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845at 270.016 kb on - strand, within GFF2845

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
267,261 - GFF2842 0.15 -1.5
267,683 + GFF2842 0.55 -0.2
267,683 + GFF2842 0.55 -1.2
267,683 + GFF2842 0.55 -0.5
267,684 - GFF2842 0.55 -0.2
267,684 - GFF2842 0.55 -0.1
267,684 - GFF2842 0.55 +0.4
267,791 + GFF2842 0.65 -0.2
267,792 - GFF2842 0.66 -0.5
267,792 - GFF2842 0.66 +0.2
267,792 - GFF2842 0.66 -0.1
267,792 - GFF2842 0.66 -0.2
267,792 - GFF2842 0.66 -0.4
267,887 + GFF2842 0.75 -0.7
267,887 + GFF2842 0.75 +0.8
267,887 + GFF2842 0.75 -0.4
267,887 + GFF2842 0.75 -0.4
267,887 + GFF2842 0.75 -0.1
267,887 + GFF2842 0.75 +0.2
267,887 + GFF2842 0.75 -1.1
267,887 + GFF2842 0.75 +1.7
267,887 + GFF2842 0.75 +1.0
267,887 + GFF2842 0.75 +0.2
267,888 - GFF2842 0.75 -0.1
267,888 - GFF2842 0.75 -1.3
267,888 - GFF2842 0.75 +0.2
267,888 - GFF2842 0.75 +0.1
267,888 - GFF2842 0.75 -0.7
267,888 - GFF2842 0.75 +0.8
267,935 + GFF2842 0.79 +0.3
267,935 + GFF2842 0.79 -1.2
267,935 + GFF2842 0.79 -0.5
267,935 + GFF2842 0.79 -0.1
267,935 + GFF2842 0.79 +1.5
267,935 + GFF2842 0.79 -1.8
267,935 + GFF2842 0.79 -0.5
267,935 + GFF2842 0.79 -1.8
267,935 + GFF2842 0.79 +0.1
267,935 + GFF2842 0.79 -0.6
267,935 + GFF2842 0.79 -0.2
267,936 - GFF2842 0.79 +0.3
267,936 - GFF2842 0.79 +0.3
267,936 - GFF2842 0.79 -1.4
267,936 - GFF2842 0.79 -0.8
267,936 - GFF2842 0.79 -1.0
267,936 - GFF2842 0.79 -0.0
267,936 - GFF2842 0.79 -0.4
267,936 - GFF2842 0.79 -0.7
267,936 - GFF2842 0.79 -1.8
267,936 - GFF2842 0.79 -0.6
267,936 - GFF2842 0.79 -1.2
267,936 - GFF2842 0.79 -0.7
268,033 + GFF2842 0.89 -0.9
268,033 + GFF2842 0.89 -0.3
268,033 + GFF2842 0.89 +0.0
268,033 + GFF2842 0.89 +0.3
268,033 + GFF2842 0.89 -0.8
268,034 - GFF2842 0.89 +0.8
268,034 - GFF2842 0.89 -0.5
268,034 - GFF2842 0.89 -0.2
268,034 - GFF2842 0.89 +0.3
268,173 + -1.0
268,173 + -1.3
268,173 + -0.8
268,173 + -1.7
268,174 - -1.1
268,174 - +0.2
268,174 - +0.2
268,174 - -4.1
268,320 + GFF2843 0.18 -1.7
268,320 + GFF2843 0.18 -0.7
268,320 + GFF2843 0.18 -1.0
268,321 - GFF2843 0.18 -1.4
268,321 - GFF2843 0.18 -0.5
268,321 - GFF2843 0.18 -1.7
268,332 + GFF2843 0.19 -0.6
268,332 + GFF2843 0.19 +0.5
268,332 + GFF2843 0.19 -1.4
268,332 + GFF2843 0.19 -1.6
268,332 + GFF2843 0.19 -0.0
268,332 + GFF2843 0.19 -1.4
268,332 + GFF2843 0.19 -1.0
268,332 + GFF2843 0.19 -1.5
268,332 + GFF2843 0.19 -1.6
268,332 + GFF2843 0.19 -2.2
268,332 + GFF2843 0.19 -1.4
268,332 + GFF2843 0.19 -1.0
268,332 + GFF2843 0.19 +0.8
268,333 - GFF2843 0.19 -1.5
268,333 - GFF2843 0.19 -0.9
268,333 - GFF2843 0.19 -1.0
268,333 - GFF2843 0.19 +0.4
268,333 - GFF2843 0.19 +1.0
268,333 - GFF2843 0.19 -0.2
268,333 - GFF2843 0.19 -2.4
268,333 - GFF2843 0.19 -1.4
268,333 - GFF2843 0.19 -1.1
268,333 - GFF2843 0.19 +0.1
268,333 - GFF2843 0.19 -1.9
268,333 - GFF2843 0.19 -2.3
268,333 - GFF2843 0.19 +0.8
268,333 - GFF2843 0.19 -1.0
268,333 - GFF2843 0.19 -1.9
268,333 - GFF2843 0.19 +0.9
268,333 - GFF2843 0.19 +1.8
268,333 - GFF2843 0.19 -0.8
268,392 + GFF2843 0.26 -1.7
268,392 + GFF2843 0.26 -1.2
268,392 + GFF2843 0.26 -0.8
268,392 + GFF2843 0.26 -0.5
268,392 + GFF2843 0.26 -0.7
268,392 + GFF2843 0.26 -1.0
268,392 + GFF2843 0.26 -1.2
268,392 + GFF2843 0.26 +0.2
268,393 - GFF2843 0.26 -1.2
268,393 - GFF2843 0.26 -0.4
268,393 - GFF2843 0.26 -1.6
268,393 - GFF2843 0.26 -2.6
268,393 - GFF2843 0.26 -1.5
268,393 - GFF2843 0.26 -0.5
268,452 + GFF2843 0.32 -1.5
268,452 + GFF2843 0.32 -1.0
268,452 + GFF2843 0.32 -1.4
268,452 + GFF2843 0.32 -1.2
268,452 + GFF2843 0.32 -0.8
268,452 + GFF2843 0.32 -0.9
268,453 - GFF2843 0.32 -0.8
268,453 - GFF2843 0.32 -0.8
268,453 - GFF2843 0.32 -2.3
268,453 - GFF2843 0.32 -1.0
268,459 + GFF2843 0.33 -0.7
268,459 + GFF2843 0.33 -1.0
268,459 + GFF2843 0.33 -0.8
268,459 + GFF2843 0.33 -1.1
268,459 + GFF2843 0.33 +0.8
268,460 - GFF2843 0.33 -0.7
268,460 - GFF2843 0.33 -1.4
268,460 - GFF2843 0.33 -1.2
268,460 - GFF2843 0.33 -0.5
268,696 + GFF2843 0.59 -1.2
268,718 + GFF2843 0.62 -0.7
268,845 + GFF2843 0.75 -0.8
268,845 + GFF2843 0.75 -1.9
268,845 + GFF2843 0.75 -1.6
268,845 + GFF2843 0.75 +0.6
268,845 + GFF2843 0.75 -0.9
268,845 + GFF2843 0.75 -1.2
268,845 + GFF2843 0.75 -0.2
268,845 + GFF2843 0.75 +0.2
268,846 - GFF2843 0.76 -0.7
268,846 - GFF2843 0.76 -0.6
268,846 - GFF2843 0.76 -1.1
268,846 - GFF2843 0.76 -1.2
268,846 - GFF2843 0.76 +0.2
268,846 - GFF2843 0.76 +0.3
268,846 - GFF2843 0.76 -1.9
268,846 - GFF2843 0.76 +1.2
268,848 + GFF2843 0.76 -0.7
268,849 - GFF2843 0.76 -1.8
268,849 - GFF2843 0.76 -1.6
268,849 - GFF2843 0.76 -0.5
268,849 - GFF2843 0.76 -1.6
268,849 - GFF2843 0.76 +1.0
268,863 + GFF2843 0.77 -0.2
268,864 - GFF2843 0.78 -1.4
268,864 - GFF2843 0.78 -1.3
269,059 + -0.1
269,060 - -1.7
269,073 + -1.0
269,073 + -1.1
269,074 - +0.2
269,285 + GFF2844 0.26 -1.0
269,285 + GFF2844 0.26 -0.2
269,286 - GFF2844 0.27 +1.4
269,286 - GFF2844 0.27 +0.1
269,303 + GFF2844 0.29 -1.3
269,303 + GFF2844 0.29 -1.4
269,408 + GFF2844 0.42 -1.1
269,408 + GFF2844 0.42 -1.4
269,408 + GFF2844 0.42 +0.4
269,408 + GFF2844 0.42 +0.3
269,408 + GFF2844 0.42 -0.2
269,408 + GFF2844 0.42 -0.8
269,447 + GFF2844 0.47 -0.9
269,448 - GFF2844 0.48 -0.5
269,534 - GFF2844 0.59 -0.3
269,603 + GFF2844 0.68 -1.1
269,603 + GFF2844 0.68 -2.7
269,603 + GFF2844 0.68 -0.9
269,603 + GFF2844 0.68 -1.0
269,603 + GFF2844 0.68 -0.9
269,604 - GFF2844 0.68 -0.8
269,604 - GFF2844 0.68 -1.2
269,604 - GFF2844 0.68 -0.1
269,604 - GFF2844 0.68 +0.8
269,924 + +0.5
269,924 + +1.8
269,924 + -0.2
269,924 + +0.9
269,924 + -2.7
269,924 + +0.6
269,924 + -0.8
269,924 + -0.5
269,925 - +0.1
269,925 - +0.3
269,925 - +0.5
269,925 - +0.5
269,925 - -0.9
270,015 + GFF2845 0.21 -0.6
270,015 + GFF2845 0.21 -1.2
270,015 + GFF2845 0.21 -0.2
270,015 + GFF2845 0.21 -0.8
270,015 + GFF2845 0.21 -1.0
270,015 + GFF2845 0.21 -1.6
270,015 + GFF2845 0.21 -1.4
270,016 - GFF2845 0.21 -0.2
270,016 - GFF2845 0.21 -0.3
270,016 - GFF2845 0.21 -1.3
270,016 - GFF2845 0.21 -1.2
270,016 - GFF2845 0.21 -0.5
270,016 - GFF2845 0.21 +0.5
270,016 - GFF2845 0.21 -1.2
270,016 - GFF2845 0.21 +0.2
270,016 - GFF2845 0.21 -0.8
270,016 - GFF2845 0.21 -1.7
270,016 - GFF2845 0.21 -0.9
270,016 - GFF2845 0.21 -1.1
270,016 - GFF2845 0.21 -1.2
270,016 - GFF2845 0.21 -0.4
270,016 - GFF2845 0.21 -1.6

Or see this region's nucleotide sequence