Strain Fitness in Variovorax sp. SCN45 around GFF2648

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2647 and GFF2648 are separated by 140 nucleotidesGFF2648 and GFF2649 are separated by 27 nucleotides GFF2647 - Long-chain-fatty-acid--CoA ligase (EC 6.2.1.3), at 60,361 to 61,920 GFF2647 GFF2648 - Transcriptional regulator, AraC family, at 62,061 to 63,095 GFF2648 GFF2649 - putative autotransporter protein, at 63,123 to 69,965 GFF2649 Position (kb) 62 63 64Strain fitness (log2 ratio) -2 -1 0 1 2at 61.082 kb on + strand, within GFF2647at 61.082 kb on + strand, within GFF2647at 61.082 kb on + strand, within GFF2647at 61.083 kb on - strand, within GFF2647at 61.316 kb on + strand, within GFF2647at 61.316 kb on + strand, within GFF2647at 61.316 kb on + strand, within GFF2647at 61.317 kb on - strand, within GFF2647at 61.427 kb on + strand, within GFF2647at 61.427 kb on + strand, within GFF2647at 61.428 kb on - strand, within GFF2647at 61.428 kb on - strand, within GFF2647at 61.428 kb on - strand, within GFF2647at 61.490 kb on - strand, within GFF2647at 61.541 kb on + strand, within GFF2647at 61.541 kb on + strand, within GFF2647at 61.542 kb on - strand, within GFF2647at 61.542 kb on - strand, within GFF2647at 61.542 kb on - strand, within GFF2647at 61.646 kb on + strand, within GFF2647at 61.647 kb on - strand, within GFF2647at 61.647 kb on - strand, within GFF2647at 61.647 kb on - strand, within GFF2647at 61.721 kb on + strand, within GFF2647at 61.721 kb on + strand, within GFF2647at 61.722 kb on - strand, within GFF2647at 61.826 kb on + strandat 61.826 kb on + strandat 61.916 kb on + strandat 61.916 kb on + strandat 61.916 kb on + strandat 61.916 kb on + strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.917 kb on - strandat 61.959 kb on + strandat 61.959 kb on + strandat 62.229 kb on + strand, within GFF2648at 62.229 kb on + strand, within GFF2648at 62.230 kb on - strand, within GFF2648at 62.230 kb on - strand, within GFF2648at 62.514 kb on + strand, within GFF2648at 62.514 kb on + strand, within GFF2648at 62.514 kb on + strand, within GFF2648at 62.592 kb on + strand, within GFF2648at 62.722 kb on + strand, within GFF2648at 63.093 kb on + strandat 63.094 kb on - strandat 63.125 kb on - strandat 63.215 kb on - strandat 63.215 kb on - strandat 63.352 kb on + strandat 63.352 kb on + strandat 63.352 kb on + strandat 63.353 kb on - strandat 63.353 kb on - strandat 63.638 kb on - strandat 63.638 kb on - strandat 63.638 kb on - strandat 63.703 kb on + strandat 63.715 kb on + strandat 63.715 kb on + strandat 63.769 kb on + strandat 63.770 kb on - strandat 63.770 kb on - strandat 63.770 kb on - strandat 63.809 kb on - strand, within GFF2649at 63.809 kb on - strand, within GFF2649at 63.809 kb on - strand, within GFF2649at 63.809 kb on - strand, within GFF2649at 63.809 kb on - strand, within GFF2649at 64.067 kb on - strand, within GFF2649at 64.087 kb on + strand, within GFF2649at 64.088 kb on - strand, within GFF2649at 64.090 kb on + strand, within GFF2649at 64.090 kb on + strand, within GFF2649at 64.090 kb on + strand, within GFF2649at 64.091 kb on - strand, within GFF2649at 64.091 kb on - strand, within GFF2649at 64.091 kb on - strand, within GFF2649at 64.091 kb on - strand, within GFF2649at 64.091 kb on - strand, within GFF2649at 64.091 kb on - strand, within GFF2649at 64.091 kb on - strand, within GFF2649

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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61,082 + GFF2647 0.46 -0.1
61,082 + GFF2647 0.46 -0.2
61,082 + GFF2647 0.46 -0.9
61,083 - GFF2647 0.46 +0.0
61,316 + GFF2647 0.61 +2.1
61,316 + GFF2647 0.61 -0.3
61,316 + GFF2647 0.61 -0.6
61,317 - GFF2647 0.61 +0.2
61,427 + GFF2647 0.68 -0.8
61,427 + GFF2647 0.68 -0.0
61,428 - GFF2647 0.68 -0.3
61,428 - GFF2647 0.68 -0.8
61,428 - GFF2647 0.68 +1.5
61,490 - GFF2647 0.72 -1.5
61,541 + GFF2647 0.76 -0.7
61,541 + GFF2647 0.76 +0.7
61,542 - GFF2647 0.76 +0.0
61,542 - GFF2647 0.76 +0.0
61,542 - GFF2647 0.76 +0.5
61,646 + GFF2647 0.82 -0.1
61,647 - GFF2647 0.82 -0.8
61,647 - GFF2647 0.82 -0.6
61,647 - GFF2647 0.82 -0.5
61,721 + GFF2647 0.87 +0.0
61,721 + GFF2647 0.87 -0.2
61,722 - GFF2647 0.87 +1.1
61,826 + +0.2
61,826 + -0.3
61,916 + +1.8
61,916 + -0.4
61,916 + +0.6
61,916 + -1.2
61,917 - -0.3
61,917 - -0.2
61,917 - -0.6
61,917 - -1.1
61,917 - +0.8
61,917 - -0.0
61,959 + -0.1
61,959 + +0.4
62,229 + GFF2648 0.16 +0.4
62,229 + GFF2648 0.16 +0.2
62,230 - GFF2648 0.16 +1.0
62,230 - GFF2648 0.16 +0.1
62,514 + GFF2648 0.44 +1.4
62,514 + GFF2648 0.44 +0.4
62,514 + GFF2648 0.44 -1.6
62,592 + GFF2648 0.51 -1.4
62,722 + GFF2648 0.64 -0.1
63,093 + +0.4
63,094 - -0.4
63,125 - +0.4
63,215 - -0.4
63,215 - -0.6
63,352 + +0.3
63,352 + -0.5
63,352 + +0.1
63,353 - +0.0
63,353 - -0.1
63,638 - -0.6
63,638 - -0.6
63,638 - +0.0
63,703 + -0.2
63,715 + -0.7
63,715 + -0.3
63,769 + -0.4
63,770 - +1.2
63,770 - -2.1
63,770 - +0.4
63,809 - GFF2649 0.10 +1.3
63,809 - GFF2649 0.10 -1.0
63,809 - GFF2649 0.10 -0.2
63,809 - GFF2649 0.10 -0.9
63,809 - GFF2649 0.10 +0.3
64,067 - GFF2649 0.14 -1.0
64,087 + GFF2649 0.14 +0.4
64,088 - GFF2649 0.14 +0.8
64,090 + GFF2649 0.14 +0.6
64,090 + GFF2649 0.14 -0.3
64,090 + GFF2649 0.14 -0.3
64,091 - GFF2649 0.14 +0.2
64,091 - GFF2649 0.14 -0.4
64,091 - GFF2649 0.14 +1.2
64,091 - GFF2649 0.14 +0.3
64,091 - GFF2649 0.14 -0.6
64,091 - GFF2649 0.14 -2.0
64,091 - GFF2649 0.14 -0.1

Or see this region's nucleotide sequence