Strain Fitness in Variovorax sp. SCN45 around GFF2586

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2584 and GFF2585 overlap by 16 nucleotidesGFF2585 and GFF2586 are separated by 48 nucleotidesGFF2586 and GFF2587 are separated by 7 nucleotidesGFF2587 and GFF2588 overlap by 37 nucleotides GFF2584 - Sulfate permease, at 639,807 to 641,486 GFF2584 GFF2585 - no description, at 641,471 to 641,584 GFF2585 GFF2586 - Hydrogenase assembly protein HoxX, at 641,633 to 643,354 GFF2586 GFF2587 - hypothetical protein, at 643,362 to 643,628 GFF2587 GFF2588 - Methionyl-tRNA synthetase (EC 6.1.1.10), at 643,592 to 645,688 GFF2588 Position (kb) 641 642 643 644Strain fitness (log2 ratio) -2 -1 0 1 2 3at 641.425 kb on + strandat 641.425 kb on + strandat 641.426 kb on - strandat 641.426 kb on - strandat 641.426 kb on - strandat 641.426 kb on - strandat 641.543 kb on + strand, within GFF2585at 641.543 kb on + strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.544 kb on - strand, within GFF2585at 641.558 kb on + strand, within GFF2585at 641.580 kb on + strandat 641.581 kb on - strandat 641.581 kb on - strandat 641.605 kb on + strandat 641.605 kb on + strandat 641.606 kb on - strandat 641.606 kb on - strandat 641.618 kb on + strandat 641.618 kb on + strandat 641.618 kb on + strandat 641.619 kb on - strandat 641.619 kb on - strandat 642.026 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.098 kb on + strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.099 kb on - strand, within GFF2586at 642.272 kb on + strand, within GFF2586at 642.272 kb on + strand, within GFF2586at 642.272 kb on + strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.273 kb on - strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.428 kb on + strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.429 kb on - strand, within GFF2586at 642.638 kb on + strand, within GFF2586at 642.638 kb on + strand, within GFF2586at 642.639 kb on - strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.923 kb on + strand, within GFF2586at 642.924 kb on - strand, within GFF2586at 642.924 kb on - strand, within GFF2586at 642.924 kb on - strand, within GFF2586at 642.924 kb on - strand, within GFF2586at 642.953 kb on + strand, within GFF2586at 642.954 kb on - strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.962 kb on + strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 642.963 kb on - strand, within GFF2586at 643.363 kb on + strandat 643.363 kb on + strandat 643.363 kb on + strandat 643.363 kb on + strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.364 kb on - strandat 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.497 kb on + strand, within GFF2587at 643.498 kb on - strand, within GFF2587at 643.498 kb on - strand, within GFF2587at 643.498 kb on - strand, within GFF2587at 643.498 kb on - strand, within GFF2587at 643.776 kb on + strandat 643.776 kb on + strandat 643.777 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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641,425 + +0.1
641,425 + +1.1
641,426 - -1.1
641,426 - -0.7
641,426 - +0.5
641,426 - -0.1
641,543 + GFF2585 0.63 +0.4
641,543 + GFF2585 0.63 +0.3
641,544 - GFF2585 0.64 -0.3
641,544 - GFF2585 0.64 +0.5
641,544 - GFF2585 0.64 +0.5
641,544 - GFF2585 0.64 -0.4
641,544 - GFF2585 0.64 -0.2
641,544 - GFF2585 0.64 -1.3
641,558 + GFF2585 0.76 -1.8
641,580 + -0.7
641,581 - -0.6
641,581 - +0.2
641,605 + -0.5
641,605 + -0.9
641,606 - +2.4
641,606 - -1.1
641,618 + +0.3
641,618 + +1.3
641,618 + -0.8
641,619 - -0.0
641,619 - -0.9
642,026 + GFF2586 0.23 +0.1
642,098 + GFF2586 0.27 -0.2
642,098 + GFF2586 0.27 -1.6
642,098 + GFF2586 0.27 +1.4
642,098 + GFF2586 0.27 +0.8
642,098 + GFF2586 0.27 -0.6
642,099 - GFF2586 0.27 -0.6
642,099 - GFF2586 0.27 -0.4
642,099 - GFF2586 0.27 +0.5
642,099 - GFF2586 0.27 -0.1
642,099 - GFF2586 0.27 -1.0
642,099 - GFF2586 0.27 +0.3
642,099 - GFF2586 0.27 +0.3
642,272 + GFF2586 0.37 -1.0
642,272 + GFF2586 0.37 +0.1
642,272 + GFF2586 0.37 -1.4
642,273 - GFF2586 0.37 -0.1
642,273 - GFF2586 0.37 -0.0
642,273 - GFF2586 0.37 -0.3
642,273 - GFF2586 0.37 -1.7
642,273 - GFF2586 0.37 +0.7
642,273 - GFF2586 0.37 +0.8
642,273 - GFF2586 0.37 -1.5
642,273 - GFF2586 0.37 -0.2
642,273 - GFF2586 0.37 +0.3
642,428 + GFF2586 0.46 +0.7
642,428 + GFF2586 0.46 +0.1
642,428 + GFF2586 0.46 +0.4
642,428 + GFF2586 0.46 -1.3
642,428 + GFF2586 0.46 +0.3
642,428 + GFF2586 0.46 -0.5
642,429 - GFF2586 0.46 -0.1
642,429 - GFF2586 0.46 -0.9
642,429 - GFF2586 0.46 +0.1
642,429 - GFF2586 0.46 +0.2
642,638 + GFF2586 0.58 +2.6
642,638 + GFF2586 0.58 +0.1
642,639 - GFF2586 0.58 -0.2
642,923 + GFF2586 0.75 -0.6
642,923 + GFF2586 0.75 +1.5
642,923 + GFF2586 0.75 -0.2
642,923 + GFF2586 0.75 +0.3
642,923 + GFF2586 0.75 -0.9
642,924 - GFF2586 0.75 -0.2
642,924 - GFF2586 0.75 -0.4
642,924 - GFF2586 0.75 -0.0
642,924 - GFF2586 0.75 -1.5
642,953 + GFF2586 0.77 -1.2
642,954 - GFF2586 0.77 -0.0
642,962 + GFF2586 0.77 +0.1
642,962 + GFF2586 0.77 -0.9
642,962 + GFF2586 0.77 -0.2
642,962 + GFF2586 0.77 +1.4
642,962 + GFF2586 0.77 +0.1
642,962 + GFF2586 0.77 +0.2
642,962 + GFF2586 0.77 +0.5
642,962 + GFF2586 0.77 -0.0
642,962 + GFF2586 0.77 +0.3
642,962 + GFF2586 0.77 +0.1
642,962 + GFF2586 0.77 -0.7
642,962 + GFF2586 0.77 -1.0
642,962 + GFF2586 0.77 -0.6
642,963 - GFF2586 0.77 -0.4
642,963 - GFF2586 0.77 +0.8
642,963 - GFF2586 0.77 -0.0
642,963 - GFF2586 0.77 +1.1
642,963 - GFF2586 0.77 +1.4
642,963 - GFF2586 0.77 +0.3
642,963 - GFF2586 0.77 +0.4
642,963 - GFF2586 0.77 -0.5
643,363 + -0.1
643,363 + -0.9
643,363 + -0.6
643,363 + -0.0
643,364 - +0.0
643,364 - -0.6
643,364 - -0.2
643,364 - -0.5
643,364 - -0.2
643,364 - -0.6
643,364 - +0.7
643,364 - -0.2
643,364 - -1.0
643,497 + GFF2587 0.51 +0.2
643,497 + GFF2587 0.51 -1.2
643,497 + GFF2587 0.51 +0.1
643,497 + GFF2587 0.51 -0.3
643,497 + GFF2587 0.51 -1.9
643,497 + GFF2587 0.51 +0.7
643,497 + GFF2587 0.51 -0.7
643,497 + GFF2587 0.51 +0.8
643,498 - GFF2587 0.51 -0.7
643,498 - GFF2587 0.51 +0.3
643,498 - GFF2587 0.51 -0.9
643,498 - GFF2587 0.51 -0.7
643,776 + -0.7
643,776 + +2.8
643,777 - +0.5

Or see this region's nucleotide sequence