Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2483 and GFF2484 overlap by 1 nucleotides GFF2484 and GFF2485 are separated by 13 nucleotides GFF2485 and GFF2486 are separated by 25 nucleotides GFF2486 and GFF2487 are separated by 104 nucleotides
GFF2483 - Urease alpha subunit (EC 3.5.1.5), at 540,349 to 542,067
GFF2483
GFF2484 - Urease beta subunit (EC 3.5.1.5), at 542,067 to 542,372
GFF2484
GFF2485 - Nickel-binding accessory protein UreJ-HupE, at 542,386 to 542,985
GFF2485
GFF2486 - Urease gamma subunit (EC 3.5.1.5), at 543,011 to 543,313
GFF2486
GFF2487 - Two-component system sensor histidine kinase/response regulator hybrid, at 543,418 to 547,056
GFF2487
Position (kb) 543
544 Strain fitness (log2 ratio) -1
0
1 at 542.043 kb on - strand at 542.255 kb on - strand, within GFF2484 at 542.255 kb on - strand, within GFF2484 at 543.219 kb on + strand, within GFF2486 at 543.401 kb on + strand at 543.502 kb on + strand at 543.503 kb on - strand at 543.538 kb on + strand at 543.538 kb on + strand at 543.539 kb on - strand at 543.539 kb on - strand at 543.539 kb on - strand at 543.539 kb on - strand at 543.550 kb on + strand at 543.661 kb on + strand at 543.661 kb on + strand at 543.662 kb on - strand at 543.662 kb on - strand at 543.662 kb on - strand at 543.740 kb on - strand at 543.740 kb on - strand at 543.827 kb on - strand, within GFF2487 at 543.827 kb on - strand, within GFF2487 at 543.827 kb on - strand, within GFF2487 at 543.827 kb on - strand, within GFF2487 at 543.878 kb on - strand, within GFF2487 at 543.919 kb on + strand, within GFF2487 at 543.920 kb on - strand, within GFF2487 at 543.920 kb on - strand, within GFF2487 at 544.036 kb on + strand, within GFF2487 at 544.037 kb on - strand, within GFF2487 at 544.037 kb on - strand, within GFF2487 at 544.082 kb on - strand, within GFF2487 at 544.082 kb on - strand, within GFF2487 at 544.186 kb on + strand, within GFF2487 at 544.186 kb on + strand, within GFF2487 at 544.313 kb on - strand, within GFF2487
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 542,043 - -0.4 542,255 - GFF2484 0.61 -0.8 542,255 - GFF2484 0.61 -0.5 543,219 + GFF2486 0.69 -0.0 543,401 + -0.2 543,502 + +0.1 543,503 - +0.8 543,538 + -0.7 543,538 + -0.3 543,539 - -1.3 543,539 - -1.2 543,539 - -1.0 543,539 - -1.2 543,550 + +0.0 543,661 + -0.1 543,661 + -0.3 543,662 - +1.0 543,662 - -0.3 543,662 - +0.1 543,740 - -0.5 543,740 - -0.7 543,827 - GFF2487 0.11 +0.2 543,827 - GFF2487 0.11 -0.4 543,827 - GFF2487 0.11 -0.4 543,827 - GFF2487 0.11 -1.0 543,878 - GFF2487 0.13 +0.7 543,919 + GFF2487 0.14 -0.7 543,920 - GFF2487 0.14 -0.1 543,920 - GFF2487 0.14 -0.6 544,036 + GFF2487 0.17 -0.5 544,037 - GFF2487 0.17 -0.9 544,037 - GFF2487 0.17 +0.2 544,082 - GFF2487 0.18 -1.1 544,082 - GFF2487 0.18 +0.5 544,186 + GFF2487 0.21 +0.2 544,186 + GFF2487 0.21 -0.2 544,313 - GFF2487 0.25 +1.0
Or see this region's nucleotide sequence