Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2477 and GFF2478 are separated by 99 nucleotides GFF2478 and GFF2479 are separated by 142 nucleotides GFF2479 and GFF2480 are separated by 23 nucleotides GFF2480 and GFF2481 are separated by 15 nucleotides GFF2481 and GFF2482 are separated by 12 nucleotides
GFF2477 - Tripartite tricarboxylate transporter TctA family, at 535,815 to 537,326
GFF2477
GFF2478 - no description, at 537,426 to 537,950
GFF2478
GFF2479 - hypothetical protein, at 538,093 to 538,272
GFF2479
GFF2480 - Urease accessory protein UreG, at 538,296 to 538,946
GFF2480
GFF2481 - Urease accessory protein UreF, at 538,962 to 539,630
GFF2481
GFF2482 - Urease accessory protein UreE, at 539,643 to 540,257
GFF2482
Position (kb) 538
539 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.390 kb on - strand at 537.390 kb on - strand at 537.714 kb on + strand, within GFF2478 at 537.714 kb on + strand, within GFF2478 at 537.715 kb on - strand, within GFF2478 at 537.832 kb on - strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.864 kb on + strand, within GFF2478 at 537.865 kb on - strand, within GFF2478 at 537.865 kb on - strand, within GFF2478 at 537.865 kb on - strand, within GFF2478 at 537.902 kb on - strand at 537.913 kb on - strand at 538.169 kb on - strand, within GFF2479 at 538.169 kb on - strand, within GFF2479 at 538.169 kb on - strand, within GFF2479 at 538.255 kb on + strand at 538.381 kb on + strand, within GFF2480 at 538.444 kb on + strand, within GFF2480 at 538.444 kb on + strand, within GFF2480 at 538.445 kb on - strand, within GFF2480 at 538.546 kb on + strand, within GFF2480 at 538.546 kb on + strand, within GFF2480 at 538.546 kb on + strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.547 kb on - strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.783 kb on + strand, within GFF2480 at 538.784 kb on - strand, within GFF2480 at 538.784 kb on - strand, within GFF2480 at 538.813 kb on + strand, within GFF2480 at 538.813 kb on + strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.814 kb on - strand, within GFF2480 at 538.984 kb on + strand at 539.251 kb on + strand, within GFF2481 at 539.560 kb on + strand, within GFF2481
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 537,390 - +1.8 537,390 - -0.9 537,714 + GFF2478 0.55 +0.6 537,714 + GFF2478 0.55 -1.7 537,715 - GFF2478 0.55 -1.4 537,832 - GFF2478 0.77 -1.7 537,864 + GFF2478 0.83 -0.3 537,864 + GFF2478 0.83 -0.1 537,864 + GFF2478 0.83 -0.6 537,864 + GFF2478 0.83 -0.5 537,864 + GFF2478 0.83 -0.9 537,864 + GFF2478 0.83 -0.7 537,864 + GFF2478 0.83 -0.3 537,865 - GFF2478 0.84 -1.2 537,865 - GFF2478 0.84 -0.9 537,865 - GFF2478 0.84 -0.4 537,902 - -0.6 537,913 - -0.2 538,169 - GFF2479 0.42 -1.0 538,169 - GFF2479 0.42 +0.0 538,169 - GFF2479 0.42 -0.2 538,255 + -0.5 538,381 + GFF2480 0.13 -0.1 538,444 + GFF2480 0.23 -1.3 538,444 + GFF2480 0.23 -0.7 538,445 - GFF2480 0.23 -0.2 538,546 + GFF2480 0.38 -0.7 538,546 + GFF2480 0.38 -0.2 538,546 + GFF2480 0.38 -0.0 538,547 - GFF2480 0.39 +0.1 538,547 - GFF2480 0.39 +0.0 538,547 - GFF2480 0.39 +0.3 538,547 - GFF2480 0.39 +0.2 538,547 - GFF2480 0.39 -0.0 538,547 - GFF2480 0.39 -0.6 538,783 + GFF2480 0.75 -0.1 538,783 + GFF2480 0.75 +0.3 538,783 + GFF2480 0.75 -1.1 538,783 + GFF2480 0.75 -0.2 538,783 + GFF2480 0.75 +0.3 538,783 + GFF2480 0.75 -0.6 538,783 + GFF2480 0.75 +0.5 538,783 + GFF2480 0.75 -0.5 538,783 + GFF2480 0.75 +0.7 538,784 - GFF2480 0.75 -2.7 538,784 - GFF2480 0.75 -0.7 538,813 + GFF2480 0.79 +0.3 538,813 + GFF2480 0.79 +0.2 538,814 - GFF2480 0.80 -0.2 538,814 - GFF2480 0.80 +1.2 538,814 - GFF2480 0.80 +1.3 538,814 - GFF2480 0.80 -0.5 538,814 - GFF2480 0.80 -0.4 538,814 - GFF2480 0.80 -0.1 538,984 + +1.3 539,251 + GFF2481 0.43 +0.5 539,560 + GFF2481 0.89 -0.6
Or see this region's nucleotide sequence