Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2455 and GFF2457 are separated by 325 nucleotides GFF2457 and GFF2456 overlap by 2 nucleotides GFF2456 and GFF2458 are separated by 68 nucleotides
GFF2455 - Transcriptional regulator RutR of pyrimidine catabolism (TetR family), at 512,773 to 513,465
GFF2455
GFF2457 - no description, at 513,791 to 514,078
GFF2457
GFF2456 - no description, at 514,077 to 514,409
GFF2456
GFF2458 - CzcABC family efflux RND transporter, membrane fusion protein, at 514,478 to 515,608
GFF2458
Position (kb) 513
514
515 Strain fitness (log2 ratio) -1
0
1
2 at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.938 kb on + strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.939 kb on - strand, within GFF2455 at 512.941 kb on + strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 512.942 kb on - strand, within GFF2455 at 513.061 kb on + strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.062 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.089 kb on - strand, within GFF2455 at 513.578 kb on - strand at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.941 kb on + strand, within GFF2457 at 513.942 kb on - strand, within GFF2457 at 514.955 kb on + strand, within GFF2458 at 514.955 kb on + strand, within GFF2458 at 514.956 kb on - strand, within GFF2458 at 515.063 kb on + strand, within GFF2458 at 515.064 kb on - strand, within GFF2458 at 515.064 kb on - strand, within GFF2458
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 512,938 + GFF2455 0.24 -1.2 512,938 + GFF2455 0.24 +0.1 512,938 + GFF2455 0.24 -0.6 512,939 - GFF2455 0.24 +0.0 512,939 - GFF2455 0.24 -0.4 512,939 - GFF2455 0.24 +0.3 512,939 - GFF2455 0.24 +0.3 512,941 + GFF2455 0.24 -0.7 512,942 - GFF2455 0.24 +0.5 512,942 - GFF2455 0.24 -0.7 512,942 - GFF2455 0.24 -0.6 512,942 - GFF2455 0.24 +0.3 512,942 - GFF2455 0.24 -0.4 513,061 + GFF2455 0.42 -0.2 513,062 - GFF2455 0.42 -1.6 513,062 - GFF2455 0.42 -0.3 513,062 - GFF2455 0.42 +0.3 513,062 - GFF2455 0.42 -0.3 513,089 - GFF2455 0.46 +0.8 513,089 - GFF2455 0.46 +0.8 513,578 - -0.0 513,941 + GFF2457 0.52 -0.6 513,941 + GFF2457 0.52 -0.9 513,941 + GFF2457 0.52 -1.4 513,942 - GFF2457 0.52 +0.4 514,955 + GFF2458 0.42 -0.4 514,955 + GFF2458 0.42 -0.5 514,956 - GFF2458 0.42 -0.8 515,063 + GFF2458 0.52 -0.1 515,064 - GFF2458 0.52 +1.8 515,064 - GFF2458 0.52 +0.5
Or see this region's nucleotide sequence