Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2283 and GFF2284 are separated by 106 nucleotides GFF2284 and GFF2285 are separated by 5 nucleotides GFF2285 and GFF2286 are separated by 117 nucleotides
GFF2283 - Enoyl-CoA hydratase (EC 4.2.1.17), at 338,627 to 339,400
GFF2283
GFF2284 - FIG00538168: hypothetical protein, at 339,507 to 340,385
GFF2284
GFF2285 - Transcriptional regulator, RpiR family, at 340,391 to 341,281
GFF2285
GFF2286 - BUG/TctC family periplasmic protein, at 341,399 to 342,394
GFF2286
Position (kb) 340
341
342 Strain fitness (log2 ratio) -2
-1
0
1
2 at 339.429 kb on - strand at 339.583 kb on - strand at 339.583 kb on - strand at 339.583 kb on - strand at 339.595 kb on - strand, within GFF2284 at 339.595 kb on - strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.615 kb on + strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.616 kb on - strand, within GFF2284 at 339.660 kb on + strand, within GFF2284 at 339.660 kb on + strand, within GFF2284 at 339.661 kb on - strand, within GFF2284 at 339.661 kb on - strand, within GFF2284 at 339.661 kb on - strand, within GFF2284 at 339.663 kb on + strand, within GFF2284 at 339.897 kb on + strand, within GFF2284 at 339.898 kb on - strand, within GFF2284 at 339.898 kb on - strand, within GFF2284 at 339.906 kb on + strand, within GFF2284 at 339.906 kb on + strand, within GFF2284 at 339.906 kb on + strand, within GFF2284 at 339.930 kb on + strand, within GFF2284 at 339.930 kb on + strand, within GFF2284 at 339.930 kb on + strand, within GFF2284 at 339.930 kb on + strand, within GFF2284 at 339.931 kb on - strand, within GFF2284 at 339.931 kb on - strand, within GFF2284 at 340.030 kb on - strand, within GFF2284 at 340.185 kb on + strand, within GFF2284 at 340.186 kb on - strand, within GFF2284 at 340.186 kb on - strand, within GFF2284 at 340.209 kb on + strand, within GFF2284 at 340.210 kb on - strand, within GFF2284 at 340.210 kb on - strand, within GFF2284 at 340.532 kb on + strand, within GFF2285 at 340.551 kb on + strand, within GFF2285 at 340.551 kb on + strand, within GFF2285 at 340.552 kb on - strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.671 kb on + strand, within GFF2285 at 340.672 kb on - strand, within GFF2285 at 341.094 kb on + strand, within GFF2285 at 341.094 kb on + strand, within GFF2285 at 341.095 kb on - strand, within GFF2285 at 341.095 kb on - strand, within GFF2285 at 341.253 kb on + strand at 341.253 kb on + strand at 341.387 kb on - strand at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.567 kb on + strand, within GFF2286 at 341.568 kb on - strand, within GFF2286 at 341.678 kb on + strand, within GFF2286 at 341.679 kb on - strand, within GFF2286 at 341.679 kb on - strand, within GFF2286 at 341.744 kb on + strand, within GFF2286 at 341.745 kb on - strand, within GFF2286 at 341.882 kb on + strand, within GFF2286 at 341.882 kb on + strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286 at 341.883 kb on - strand, within GFF2286
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 339,429 - +0.6 339,583 - -0.4 339,583 - +0.9 339,583 - +1.1 339,595 - GFF2284 0.10 -0.1 339,595 - GFF2284 0.10 -1.1 339,615 + GFF2284 0.12 -0.3 339,615 + GFF2284 0.12 +0.1 339,615 + GFF2284 0.12 -1.1 339,615 + GFF2284 0.12 -0.1 339,615 + GFF2284 0.12 +0.3 339,616 - GFF2284 0.12 +1.0 339,616 - GFF2284 0.12 -0.2 339,616 - GFF2284 0.12 +0.1 339,616 - GFF2284 0.12 +0.2 339,660 + GFF2284 0.17 -0.4 339,660 + GFF2284 0.17 -0.1 339,661 - GFF2284 0.18 -0.0 339,661 - GFF2284 0.18 +0.9 339,661 - GFF2284 0.18 -1.0 339,663 + GFF2284 0.18 -0.4 339,897 + GFF2284 0.44 +1.1 339,898 - GFF2284 0.44 +0.7 339,898 - GFF2284 0.44 -0.4 339,906 + GFF2284 0.45 +1.2 339,906 + GFF2284 0.45 +0.5 339,906 + GFF2284 0.45 +0.1 339,930 + GFF2284 0.48 +0.4 339,930 + GFF2284 0.48 +0.9 339,930 + GFF2284 0.48 +0.0 339,930 + GFF2284 0.48 +0.5 339,931 - GFF2284 0.48 -0.5 339,931 - GFF2284 0.48 -0.5 340,030 - GFF2284 0.59 -0.1 340,185 + GFF2284 0.77 -0.5 340,186 - GFF2284 0.77 -0.3 340,186 - GFF2284 0.77 +0.8 340,209 + GFF2284 0.80 -1.3 340,210 - GFF2284 0.80 +0.1 340,210 - GFF2284 0.80 -0.4 340,532 + GFF2285 0.16 +0.7 340,551 + GFF2285 0.18 -0.2 340,551 + GFF2285 0.18 -0.3 340,552 - GFF2285 0.18 -0.5 340,671 + GFF2285 0.31 -0.1 340,671 + GFF2285 0.31 +0.6 340,671 + GFF2285 0.31 +0.9 340,672 - GFF2285 0.32 +0.7 341,094 + GFF2285 0.79 -0.5 341,094 + GFF2285 0.79 +0.2 341,095 - GFF2285 0.79 +1.4 341,095 - GFF2285 0.79 -2.1 341,253 + -0.4 341,253 + +0.5 341,387 - -0.8 341,567 + GFF2286 0.17 -0.1 341,567 + GFF2286 0.17 -0.3 341,567 + GFF2286 0.17 -0.1 341,567 + GFF2286 0.17 -0.5 341,568 - GFF2286 0.17 -0.2 341,678 + GFF2286 0.28 +2.0 341,679 - GFF2286 0.28 -0.4 341,679 - GFF2286 0.28 -0.3 341,744 + GFF2286 0.35 -0.5 341,745 - GFF2286 0.35 -0.0 341,882 + GFF2286 0.48 -0.6 341,882 + GFF2286 0.48 -0.4 341,883 - GFF2286 0.49 +0.5 341,883 - GFF2286 0.49 +0.5 341,883 - GFF2286 0.49 +0.3 341,883 - GFF2286 0.49 -0.9
Or see this region's nucleotide sequence