Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2276 and GFF2277 are separated by 50 nucleotides GFF2277 and GFF2278 are separated by 1 nucleotides GFF2278 and GFF2279 are separated by 1 nucleotides
GFF2276 - Chlorogenate esterase, at 329,371 to 331,110
GFF2276
GFF2277 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,161 to 331,895
GFF2277
GFF2278 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate) / ABC transporter, ATP-binding protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 331,897 to 333,711
GFF2278
GFF2279 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 333,713 to 334,753
GFF2279
Position (kb) 331
332
333
334 Strain fitness (log2 ratio) -2
-1
0
1 at 330.924 kb on - strand, within GFF2276 at 330.924 kb on - strand, within GFF2276 at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.189 kb on + strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.190 kb on - strand at 331.267 kb on + strand, within GFF2277 at 331.267 kb on + strand, within GFF2277 at 331.267 kb on + strand, within GFF2277 at 331.268 kb on - strand, within GFF2277 at 331.268 kb on - strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.528 kb on + strand, within GFF2277 at 331.529 kb on - strand, within GFF2277 at 331.529 kb on - strand, within GFF2277 at 332.765 kb on + strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.766 kb on - strand, within GFF2278 at 332.810 kb on + strand, within GFF2278 at 332.811 kb on - strand, within GFF2278 at 332.811 kb on - strand, within GFF2278 at 333.195 kb on - strand, within GFF2278 at 333.195 kb on - strand, within GFF2278 at 333.263 kb on + strand, within GFF2278 at 333.263 kb on + strand, within GFF2278 at 333.264 kb on - strand, within GFF2278 at 333.296 kb on + strand, within GFF2278 at 333.296 kb on + strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.297 kb on - strand, within GFF2278 at 333.299 kb on + strand, within GFF2278 at 333.299 kb on + strand, within GFF2278 at 333.338 kb on + strand, within GFF2278 at 333.338 kb on + strand, within GFF2278 at 333.339 kb on - strand, within GFF2278 at 333.452 kb on + strand, within GFF2278 at 333.464 kb on + strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.465 kb on - strand, within GFF2278 at 333.554 kb on + strand at 333.555 kb on - strand at 333.555 kb on - strand at 333.555 kb on - strand at 333.566 kb on + strand at 333.566 kb on + strand at 333.567 kb on - strand at 333.567 kb on - strand at 333.567 kb on - strand at 333.870 kb on + strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 333.937 kb on - strand, within GFF2279 at 334.090 kb on - strand, within GFF2279 at 334.326 kb on + strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.327 kb on - strand, within GFF2279 at 334.614 kb on + strand, within GFF2279 at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.695 kb on + strand at 334.696 kb on - strand at 334.696 kb on - strand at 334.696 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 330,924 - GFF2276 0.89 -0.8 330,924 - GFF2276 0.89 -0.1 331,189 + +0.5 331,189 + -0.1 331,189 + -0.2 331,189 + -1.6 331,190 - -0.2 331,190 - +1.4 331,190 - +0.3 331,190 - -0.1 331,190 - +0.1 331,190 - -0.3 331,267 + GFF2277 0.14 -0.3 331,267 + GFF2277 0.14 -0.5 331,267 + GFF2277 0.14 +0.5 331,268 - GFF2277 0.15 -1.1 331,268 - GFF2277 0.15 -0.0 331,528 + GFF2277 0.50 -0.3 331,528 + GFF2277 0.50 -1.1 331,528 + GFF2277 0.50 +0.2 331,528 + GFF2277 0.50 -0.8 331,529 - GFF2277 0.50 -2.3 331,529 - GFF2277 0.50 -1.2 332,765 + GFF2278 0.48 -0.4 332,766 - GFF2278 0.48 -0.3 332,766 - GFF2278 0.48 +0.9 332,810 + GFF2278 0.50 -0.0 332,811 - GFF2278 0.50 +0.3 332,811 - GFF2278 0.50 +0.6 333,195 - GFF2278 0.72 -0.3 333,195 - GFF2278 0.72 -1.1 333,263 + GFF2278 0.75 -0.5 333,263 + GFF2278 0.75 -0.3 333,264 - GFF2278 0.75 +0.4 333,296 + GFF2278 0.77 -0.2 333,296 + GFF2278 0.77 +0.3 333,297 - GFF2278 0.77 +0.3 333,297 - GFF2278 0.77 +0.3 333,297 - GFF2278 0.77 +0.3 333,299 + GFF2278 0.77 +0.3 333,299 + GFF2278 0.77 +0.1 333,338 + GFF2278 0.79 -0.6 333,338 + GFF2278 0.79 +0.5 333,339 - GFF2278 0.79 -0.1 333,452 + GFF2278 0.86 -0.3 333,464 + GFF2278 0.86 +0.7 333,465 - GFF2278 0.86 +1.3 333,465 - GFF2278 0.86 -0.2 333,465 - GFF2278 0.86 -0.4 333,554 + +1.1 333,555 - -0.1 333,555 - +0.0 333,555 - -0.7 333,566 + -0.7 333,566 + -0.6 333,567 - -0.4 333,567 - -0.9 333,567 - +1.3 333,870 + GFF2279 0.15 +0.4 333,937 - GFF2279 0.22 +0.3 333,937 - GFF2279 0.22 -0.7 333,937 - GFF2279 0.22 +0.0 334,090 - GFF2279 0.36 +0.5 334,326 + GFF2279 0.59 -0.3 334,327 - GFF2279 0.59 +0.3 334,327 - GFF2279 0.59 +0.9 334,327 - GFF2279 0.59 +0.2 334,614 + GFF2279 0.87 -0.1 334,695 + +0.4 334,695 + +0.4 334,695 + -0.1 334,695 + -0.4 334,695 + -0.3 334,696 - -0.2 334,696 - -0.3 334,696 - -0.5
Or see this region's nucleotide sequence