Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2254 and GFF2255 are separated by 8 nucleotides GFF2255 and GFF2256 are separated by 16 nucleotides GFF2256 and GFF2257 overlap by 8 nucleotides
GFF2254 - HYPOTHETICAL/UNKNOWN PROTEIN, at 309,807 to 310,448
GFF2254
GFF2255 - Ribonuclease Z (EC 3.1.26.11), at 310,457 to 311,413
GFF2255
GFF2256 - Uncharacterized protein YcgL, at 311,430 to 312,281
GFF2256
GFF2257 - RNA 3'-terminal phosphate cyclase (EC 6.5.1.4), at 312,274 to 313,311
GFF2257
Position (kb) 311
312
313 Strain fitness (log2 ratio) -1
0
1 at 310.664 kb on + strand, within GFF2255 at 310.793 kb on + strand, within GFF2255 at 310.794 kb on - strand, within GFF2255 at 310.857 kb on + strand, within GFF2255 at 310.858 kb on - strand, within GFF2255 at 310.858 kb on - strand, within GFF2255 at 311.042 kb on + strand, within GFF2255 at 311.043 kb on - strand, within GFF2255 at 311.330 kb on + strand at 311.369 kb on + strand at 311.613 kb on + strand, within GFF2256 at 311.634 kb on + strand, within GFF2256 at 311.635 kb on - strand, within GFF2256 at 311.635 kb on - strand, within GFF2256 at 311.862 kb on + strand, within GFF2256 at 311.863 kb on - strand, within GFF2256 at 311.928 kb on + strand, within GFF2256 at 311.929 kb on - strand, within GFF2256 at 311.934 kb on + strand, within GFF2256 at 311.934 kb on + strand, within GFF2256 at 311.935 kb on - strand, within GFF2256 at 312.222 kb on + strand at 312.526 kb on + strand, within GFF2257 at 312.526 kb on + strand, within GFF2257 at 312.997 kb on + strand, within GFF2257 at 312.997 kb on + strand, within GFF2257
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 310,664 + GFF2255 0.22 -0.1 310,793 + GFF2255 0.35 -0.5 310,794 - GFF2255 0.35 +0.3 310,857 + GFF2255 0.42 -0.8 310,858 - GFF2255 0.42 -1.2 310,858 - GFF2255 0.42 -0.4 311,042 + GFF2255 0.61 -0.2 311,043 - GFF2255 0.61 +0.4 311,330 + -0.8 311,369 + +0.1 311,613 + GFF2256 0.21 -1.1 311,634 + GFF2256 0.24 +0.1 311,635 - GFF2256 0.24 -0.1 311,635 - GFF2256 0.24 +0.3 311,862 + GFF2256 0.51 -0.7 311,863 - GFF2256 0.51 +0.1 311,928 + GFF2256 0.58 -0.6 311,929 - GFF2256 0.59 -0.6 311,934 + GFF2256 0.59 -0.1 311,934 + GFF2256 0.59 +0.2 311,935 - GFF2256 0.59 -0.1 312,222 + +0.1 312,526 + GFF2257 0.24 +0.3 312,526 + GFF2257 0.24 -0.6 312,997 + GFF2257 0.70 +0.0 312,997 + GFF2257 0.70 +0.7
Or see this region's nucleotide sequence