Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF2223 and GFF2224 overlap by 8 nucleotides GFF2224 and GFF2225 overlap by 4 nucleotides GFF2225 and GFF2226 overlap by 23 nucleotides GFF2226 and GFF2227 are separated by 175 nucleotides
GFF2223 - ABC transporter, ATP-binding protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 285,309 to 286,025
GFF2223
GFF2224 - ABC transporter, permease protein 1 (cluster 4, leucine/isoleucine/valine/benzoate), at 286,018 to 286,884
GFF2224
GFF2225 - ABC transporter, permease protein 2 (cluster 4, leucine/isoleucine/valine/benzoate), at 286,881 to 287,924
GFF2225
GFF2226 - no description, at 287,902 to 288,405
GFF2226
GFF2227 - Tricarboxylate transport protein TctC, at 288,581 to 289,588
GFF2227
Position (kb) 286
287
288 Strain fitness (log2 ratio) -2
-1
0
1
2 at 285.921 kb on + strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.922 kb on - strand, within GFF2223 at 285.982 kb on + strand at 285.996 kb on + strand at 285.996 kb on + strand at 285.997 kb on - strand at 286.060 kb on + strand at 286.060 kb on + strand at 286.061 kb on - strand at 286.061 kb on - strand at 286.244 kb on - strand, within GFF2224 at 286.586 kb on - strand, within GFF2224 at 286.889 kb on + strand at 286.889 kb on + strand at 286.889 kb on + strand at 287.046 kb on + strand, within GFF2225 at 287.046 kb on + strand, within GFF2225 at 287.046 kb on + strand, within GFF2225 at 287.047 kb on - strand, within GFF2225 at 287.047 kb on - strand, within GFF2225 at 287.137 kb on - strand, within GFF2225 at 287.137 kb on - strand, within GFF2225 at 287.189 kb on - strand, within GFF2225 at 287.262 kb on + strand, within GFF2225 at 287.263 kb on - strand, within GFF2225 at 287.400 kb on + strand, within GFF2225 at 287.400 kb on + strand, within GFF2225 at 287.401 kb on - strand, within GFF2225 at 287.445 kb on + strand, within GFF2225 at 287.446 kb on - strand, within GFF2225 at 287.446 kb on - strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.553 kb on + strand, within GFF2225 at 287.554 kb on - strand, within GFF2225 at 287.554 kb on - strand, within GFF2225 at 287.595 kb on + strand, within GFF2225 at 287.595 kb on + strand, within GFF2225 at 287.596 kb on - strand, within GFF2225 at 287.767 kb on - strand, within GFF2225 at 287.767 kb on - strand, within GFF2225 at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.927 kb on + strand at 287.928 kb on - strand at 287.928 kb on - strand at 287.928 kb on - strand at 287.930 kb on + strand at 287.930 kb on + strand at 287.931 kb on - strand at 287.954 kb on + strand, within GFF2226 at 287.955 kb on - strand, within GFF2226 at 287.955 kb on - strand, within GFF2226 at 288.002 kb on + strand, within GFF2226 at 288.003 kb on - strand, within GFF2226 at 288.003 kb on - strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.248 kb on + strand, within GFF2226 at 288.359 kb on + strand at 288.359 kb on + strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.469 kb on + strand at 288.470 kb on - strand at 288.530 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 285,921 + GFF2223 0.85 -1.1 285,922 - GFF2223 0.85 -0.2 285,922 - GFF2223 0.85 -0.8 285,922 - GFF2223 0.85 +0.2 285,922 - GFF2223 0.85 -0.9 285,922 - GFF2223 0.85 +0.7 285,922 - GFF2223 0.85 -0.8 285,922 - GFF2223 0.85 -0.5 285,982 + -0.9 285,996 + -0.2 285,996 + +0.1 285,997 - -1.0 286,060 + +0.2 286,060 + -0.6 286,061 - +0.0 286,061 - -0.5 286,244 - GFF2224 0.26 +0.0 286,586 - GFF2224 0.66 -0.6 286,889 + +0.2 286,889 + +0.8 286,889 + +0.2 287,046 + GFF2225 0.16 -1.0 287,046 + GFF2225 0.16 +0.3 287,046 + GFF2225 0.16 +0.3 287,047 - GFF2225 0.16 -0.2 287,047 - GFF2225 0.16 +0.6 287,137 - GFF2225 0.25 -0.5 287,137 - GFF2225 0.25 +0.4 287,189 - GFF2225 0.30 +0.0 287,262 + GFF2225 0.36 +1.2 287,263 - GFF2225 0.37 -0.3 287,400 + GFF2225 0.50 +0.0 287,400 + GFF2225 0.50 +0.8 287,401 - GFF2225 0.50 -0.7 287,445 + GFF2225 0.54 -2.1 287,446 - GFF2225 0.54 +0.2 287,446 - GFF2225 0.54 +0.1 287,553 + GFF2225 0.64 -0.1 287,553 + GFF2225 0.64 -0.3 287,553 + GFF2225 0.64 +0.1 287,553 + GFF2225 0.64 +0.5 287,553 + GFF2225 0.64 -1.5 287,554 - GFF2225 0.64 +0.2 287,554 - GFF2225 0.64 -0.2 287,595 + GFF2225 0.68 +1.1 287,595 + GFF2225 0.68 -0.2 287,596 - GFF2225 0.68 -0.8 287,767 - GFF2225 0.85 -0.2 287,767 - GFF2225 0.85 -0.8 287,927 + +0.0 287,927 + +0.3 287,927 + -0.1 287,927 + +0.7 287,927 + -0.4 287,928 - -1.5 287,928 - -0.5 287,928 - +0.4 287,930 + -0.2 287,930 + -0.2 287,931 - +2.3 287,954 + GFF2226 0.10 +0.5 287,955 - GFF2226 0.11 -0.6 287,955 - GFF2226 0.11 -0.2 288,002 + GFF2226 0.20 +1.1 288,003 - GFF2226 0.20 -0.5 288,003 - GFF2226 0.20 -1.4 288,248 + GFF2226 0.69 -0.3 288,248 + GFF2226 0.69 +1.2 288,248 + GFF2226 0.69 +0.9 288,359 + +0.2 288,359 + -0.8 288,360 - +0.4 288,360 - +0.2 288,360 - -0.8 288,469 + -0.5 288,469 + +0.2 288,469 + -0.6 288,469 + -0.3 288,470 - -0.1 288,530 + +0.4
Or see this region's nucleotide sequence