Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF21 and GFF22 overlap by 4 nucleotides GFF22 and GFF23 are separated by 18 nucleotides GFF23 and GFF24 are separated by 8 nucleotides
GFF21 - no description, at 22,495 to 23,631
GFF21
GFF22 - hypothetical protein, at 23,628 to 26,267
GFF22
GFF23 - no description, at 26,286 to 26,720
GFF23
GFF24 - VgrG protein, at 26,729 to 29,071
GFF24
Position (kb) 23
24
25
26
27 Strain fitness (log2 ratio) -2
-1
0
1 at 22.755 kb on - strand, within GFF21 at 22.755 kb on - strand, within GFF21 at 23.681 kb on - strand at 23.841 kb on + strand at 23.841 kb on + strand at 25.446 kb on + strand, within GFF22 at 25.446 kb on + strand, within GFF22 at 25.446 kb on + strand, within GFF22 at 25.447 kb on - strand, within GFF22 at 25.675 kb on + strand, within GFF22 at 26.359 kb on + strand, within GFF23 at 26.638 kb on + strand, within GFF23 at 26.638 kb on + strand, within GFF23 at 26.639 kb on - strand, within GFF23 at 26.757 kb on + strand at 26.757 kb on + strand at 26.758 kb on - strand at 26.778 kb on + strand at 26.850 kb on + strand at 26.850 kb on + strand at 26.851 kb on - strand at 26.899 kb on - strand at 26.899 kb on - strand at 27.003 kb on + strand, within GFF24 at 27.015 kb on + strand, within GFF24 at 27.015 kb on + strand, within GFF24 at 27.036 kb on + strand, within GFF24 at 27.036 kb on + strand, within GFF24 at 27.036 kb on + strand, within GFF24 at 27.057 kb on + strand, within GFF24 at 27.057 kb on + strand, within GFF24 at 27.057 kb on + strand, within GFF24 at 27.058 kb on - strand, within GFF24 at 27.058 kb on - strand, within GFF24 at 27.058 kb on - strand, within GFF24 at 27.058 kb on - strand, within GFF24 at 27.078 kb on + strand, within GFF24 at 27.078 kb on + strand, within GFF24
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 22,755 - GFF21 0.23 -0.8 22,755 - GFF21 0.23 +1.3 23,681 - -0.6 23,841 + +0.7 23,841 + -1.0 25,446 + GFF22 0.69 -0.6 25,446 + GFF22 0.69 -0.7 25,446 + GFF22 0.69 -0.3 25,447 - GFF22 0.69 -0.3 25,675 + GFF22 0.78 -1.6 26,359 + GFF23 0.17 -0.2 26,638 + GFF23 0.81 +1.6 26,638 + GFF23 0.81 -1.7 26,639 - GFF23 0.81 -0.6 26,757 + -1.6 26,757 + -0.0 26,758 - +0.2 26,778 + +0.4 26,850 + +0.0 26,850 + +0.4 26,851 - -0.1 26,899 - +0.6 26,899 - -0.6 27,003 + GFF24 0.12 +0.6 27,015 + GFF24 0.12 +0.5 27,015 + GFF24 0.12 -1.9 27,036 + GFF24 0.13 +0.7 27,036 + GFF24 0.13 +1.1 27,036 + GFF24 0.13 -1.1 27,057 + GFF24 0.14 -1.1 27,057 + GFF24 0.14 -0.8 27,057 + GFF24 0.14 -0.5 27,058 - GFF24 0.14 -0.5 27,058 - GFF24 0.14 +0.0 27,058 - GFF24 0.14 +0.6 27,058 - GFF24 0.14 +0.1 27,078 + GFF24 0.15 +0.4 27,078 + GFF24 0.15 -0.4
Or see this region's nucleotide sequence