Strain Fitness in Variovorax sp. SCN45 around GFF2194

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF2193 and GFF2194 are separated by 84 nucleotidesGFF2194 and GFF2195 are separated by 106 nucleotides GFF2193 - PE_PGRS, at 248,600 to 252,736 GFF2193 GFF2194 - Tol-Pal system peptidoglycan-associated lipoprotein PAL, at 252,821 to 253,324 GFF2194 GFF2195 - FIG00732904: hypothetical protein, at 253,431 to 256,526 GFF2195 Position (kb) 252 253 254Strain fitness (log2 ratio) -2 -1 0 1 2at 252.821 kb on - strandat 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.914 kb on + strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.915 kb on - strand, within GFF2194at 252.917 kb on + strand, within GFF2194at 252.917 kb on + strand, within GFF2194at 252.917 kb on + strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.918 kb on - strand, within GFF2194at 252.920 kb on + strand, within GFF2194at 252.920 kb on + strand, within GFF2194at 252.920 kb on + strand, within GFF2194at 252.921 kb on - strand, within GFF2194at 253.013 kb on + strand, within GFF2194at 253.013 kb on + strand, within GFF2194at 253.013 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.031 kb on + strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.032 kb on - strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.079 kb on + strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.080 kb on - strand, within GFF2194at 253.148 kb on + strand, within GFF2194at 253.148 kb on + strand, within GFF2194at 253.286 kb on + strandat 253.287 kb on - strandat 253.317 kb on - strandat 253.740 kb on + strandat 253.740 kb on + strandat 253.740 kb on + strandat 253.741 kb on - strand, within GFF2195at 253.875 kb on + strand, within GFF2195at 253.875 kb on + strand, within GFF2195at 253.876 kb on - strand, within GFF2195at 253.876 kb on - strand, within GFF2195at 253.876 kb on - strand, within GFF2195at 253.935 kb on + strand, within GFF2195at 254.079 kb on + strand, within GFF2195at 254.080 kb on - strand, within GFF2195at 254.080 kb on - strand, within GFF2195at 254.080 kb on - strand, within GFF2195at 254.080 kb on - strand, within GFF2195at 254.118 kb on + strand, within GFF2195at 254.118 kb on + strand, within GFF2195at 254.119 kb on - strand, within GFF2195at 254.119 kb on - strand, within GFF2195at 254.157 kb on + strand, within GFF2195at 254.157 kb on + strand, within GFF2195at 254.157 kb on + strand, within GFF2195at 254.158 kb on - strand, within GFF2195at 254.188 kb on - strand, within GFF2195at 254.188 kb on - strand, within GFF2195at 254.287 kb on - strand, within GFF2195at 254.287 kb on - strand, within GFF2195

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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252,821 - +0.0
252,914 + GFF2194 0.18 +0.2
252,914 + GFF2194 0.18 +0.4
252,914 + GFF2194 0.18 -0.6
252,914 + GFF2194 0.18 +0.2
252,914 + GFF2194 0.18 -1.4
252,914 + GFF2194 0.18 +0.6
252,914 + GFF2194 0.18 +0.8
252,915 - GFF2194 0.19 +0.1
252,915 - GFF2194 0.19 -0.0
252,915 - GFF2194 0.19 -0.5
252,915 - GFF2194 0.19 +0.8
252,915 - GFF2194 0.19 -0.2
252,915 - GFF2194 0.19 -0.4
252,915 - GFF2194 0.19 +0.8
252,917 + GFF2194 0.19 +2.6
252,917 + GFF2194 0.19 -0.7
252,917 + GFF2194 0.19 -0.7
252,918 - GFF2194 0.19 +1.8
252,918 - GFF2194 0.19 +0.1
252,918 - GFF2194 0.19 +0.8
252,918 - GFF2194 0.19 -0.1
252,918 - GFF2194 0.19 +0.4
252,918 - GFF2194 0.19 -0.4
252,920 + GFF2194 0.20 -0.2
252,920 + GFF2194 0.20 -0.4
252,920 + GFF2194 0.20 +0.8
252,921 - GFF2194 0.20 +0.0
253,013 + GFF2194 0.38 -0.8
253,013 + GFF2194 0.38 -0.4
253,013 + GFF2194 0.38 +0.3
253,031 + GFF2194 0.42 -0.3
253,031 + GFF2194 0.42 -0.4
253,031 + GFF2194 0.42 +0.0
253,031 + GFF2194 0.42 -0.2
253,031 + GFF2194 0.42 -0.1
253,032 - GFF2194 0.42 -1.8
253,032 - GFF2194 0.42 +0.8
253,032 - GFF2194 0.42 +2.4
253,032 - GFF2194 0.42 -0.6
253,032 - GFF2194 0.42 +0.1
253,079 + GFF2194 0.51 +0.9
253,079 + GFF2194 0.51 +0.3
253,079 + GFF2194 0.51 +0.1
253,079 + GFF2194 0.51 -0.9
253,079 + GFF2194 0.51 -0.3
253,080 - GFF2194 0.51 +0.2
253,080 - GFF2194 0.51 -0.2
253,080 - GFF2194 0.51 +0.1
253,080 - GFF2194 0.51 +1.2
253,080 - GFF2194 0.51 +0.5
253,080 - GFF2194 0.51 +0.1
253,080 - GFF2194 0.51 +0.3
253,148 + GFF2194 0.65 +0.5
253,148 + GFF2194 0.65 +0.3
253,286 + +0.2
253,287 - +0.9
253,317 - -0.2
253,740 + +1.3
253,740 + +0.8
253,740 + -1.6
253,741 - GFF2195 0.10 -0.7
253,875 + GFF2195 0.14 -0.3
253,875 + GFF2195 0.14 -0.1
253,876 - GFF2195 0.14 +0.1
253,876 - GFF2195 0.14 +0.1
253,876 - GFF2195 0.14 -0.7
253,935 + GFF2195 0.16 +0.2
254,079 + GFF2195 0.21 +1.2
254,080 - GFF2195 0.21 -0.8
254,080 - GFF2195 0.21 -0.8
254,080 - GFF2195 0.21 +0.3
254,080 - GFF2195 0.21 -0.6
254,118 + GFF2195 0.22 -2.0
254,118 + GFF2195 0.22 +0.1
254,119 - GFF2195 0.22 +0.1
254,119 - GFF2195 0.22 -0.2
254,157 + GFF2195 0.23 +1.4
254,157 + GFF2195 0.23 -1.1
254,157 + GFF2195 0.23 -0.3
254,158 - GFF2195 0.23 +1.7
254,188 - GFF2195 0.24 -0.5
254,188 - GFF2195 0.24 -0.6
254,287 - GFF2195 0.28 +0.2
254,287 - GFF2195 0.28 -0.2

Or see this region's nucleotide sequence