Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1946 and GFF1947 are separated by 432 nucleotides GFF1947 and GFF1948 are separated by 178 nucleotides
GFF1946 - Cardiolipin synthase (EC 2.7.8.-) phosphatidylethanolamine-utilizing, bacterial type ClsC, at 641,010 to 642,365
GFF1946
GFF1947 - no description, at 642,798 to 643,439
GFF1947
GFF1948 - Phage integrase, at 643,618 to 644,088
GFF1948
Position (kb) 642
643
644 Strain fitness (log2 ratio) -2
-1
0
1
2 at 642.117 kb on + strand, within GFF1946 at 642.118 kb on - strand, within GFF1946 at 642.222 kb on - strand, within GFF1946 at 642.238 kb on + strand at 642.238 kb on + strand at 642.238 kb on + strand at 642.238 kb on + strand at 642.239 kb on - strand at 642.239 kb on - strand at 642.239 kb on - strand at 642.239 kb on - strand at 642.239 kb on - strand at 642.313 kb on + strand at 642.314 kb on - strand at 642.314 kb on - strand at 642.314 kb on - strand at 642.314 kb on - strand at 642.428 kb on - strand at 642.441 kb on + strand at 642.441 kb on + strand at 642.441 kb on + strand at 642.442 kb on - strand at 642.442 kb on - strand at 642.442 kb on - strand at 642.479 kb on + strand at 642.479 kb on + strand at 642.479 kb on + strand at 642.479 kb on + strand at 642.480 kb on - strand at 642.480 kb on - strand at 642.483 kb on + strand at 642.483 kb on + strand at 642.484 kb on - strand at 642.484 kb on - strand at 642.484 kb on - strand at 642.484 kb on - strand at 642.500 kb on + strand at 642.501 kb on - strand at 642.607 kb on + strand at 642.607 kb on + strand at 642.607 kb on + strand at 642.608 kb on - strand at 642.608 kb on - strand at 642.626 kb on + strand at 642.627 kb on - strand at 642.797 kb on + strand at 642.798 kb on - strand at 642.908 kb on - strand, within GFF1947 at 643.042 kb on + strand, within GFF1947 at 643.042 kb on + strand, within GFF1947 at 643.042 kb on + strand, within GFF1947 at 643.426 kb on + strand at 643.426 kb on + strand at 643.427 kb on - strand at 643.427 kb on - strand at 643.430 kb on - strand at 643.430 kb on - strand at 643.430 kb on - strand at 643.651 kb on + strand at 643.652 kb on - strand at 643.861 kb on + strand, within GFF1948 at 643.862 kb on - strand, within GFF1948 at 643.862 kb on - strand, within GFF1948 at 643.947 kb on + strand, within GFF1948 at 643.948 kb on - strand, within GFF1948 at 644.065 kb on + strand at 644.065 kb on + strand at 644.066 kb on - strand at 644.066 kb on - strand at 644.066 kb on - strand at 644.066 kb on - strand at 644.086 kb on + strand at 644.086 kb on + strand at 644.086 kb on + strand at 644.086 kb on + strand at 644.086 kb on + strand at 644.087 kb on - strand at 644.087 kb on - strand at 644.271 kb on + strand at 644.271 kb on + strand at 644.272 kb on - strand at 644.274 kb on + strand at 644.274 kb on + strand at 644.274 kb on + strand at 644.274 kb on + strand at 644.365 kb on - strand at 644.407 kb on - strand at 644.407 kb on - strand at 644.407 kb on - strand at 644.429 kb on + strand at 644.437 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 642,117 + GFF1946 0.82 +1.2 642,118 - GFF1946 0.82 -0.1 642,222 - GFF1946 0.89 -0.6 642,238 + -0.4 642,238 + +0.6 642,238 + +0.2 642,238 + -0.5 642,239 - -0.8 642,239 - +0.8 642,239 - -0.1 642,239 - +0.5 642,239 - -0.4 642,313 + +0.2 642,314 - +0.9 642,314 - -0.2 642,314 - +0.2 642,314 - -0.6 642,428 - +0.2 642,441 + -0.8 642,441 + +0.4 642,441 + +1.8 642,442 - -0.5 642,442 - -0.4 642,442 - -0.2 642,479 + +1.2 642,479 + -1.0 642,479 + -0.2 642,479 + -0.5 642,480 - +0.8 642,480 - +0.3 642,483 + -0.1 642,483 + -0.2 642,484 - -0.3 642,484 - -0.1 642,484 - -1.8 642,484 - -0.5 642,500 + -1.5 642,501 - +0.6 642,607 + -0.7 642,607 + -0.0 642,607 + -0.7 642,608 - -0.3 642,608 - -0.0 642,626 + +0.1 642,627 - +1.1 642,797 + +0.0 642,798 - +0.1 642,908 - GFF1947 0.17 -0.2 643,042 + GFF1947 0.38 +0.4 643,042 + GFF1947 0.38 +0.6 643,042 + GFF1947 0.38 -0.8 643,426 + -1.2 643,426 + -0.5 643,427 - -1.0 643,427 - -0.2 643,430 - -0.5 643,430 - +0.4 643,430 - +0.3 643,651 + +0.1 643,652 - +0.5 643,861 + GFF1948 0.52 -1.5 643,862 - GFF1948 0.52 -0.4 643,862 - GFF1948 0.52 -0.4 643,947 + GFF1948 0.70 -0.4 643,948 - GFF1948 0.70 -1.2 644,065 + +0.1 644,065 + -1.2 644,066 - -0.1 644,066 - -0.4 644,066 - -0.5 644,066 - +1.0 644,086 + -0.5 644,086 + -0.9 644,086 + +0.0 644,086 + -0.1 644,086 + -0.2 644,087 - +0.5 644,087 - +0.0 644,271 + -1.2 644,271 + +0.1 644,272 - -0.8 644,274 + +0.4 644,274 + -0.6 644,274 + +0.1 644,274 + +0.8 644,365 - +0.8 644,407 - -1.6 644,407 - -2.0 644,407 - -0.6 644,429 + +0.6 644,437 + -0.8
Or see this region's nucleotide sequence