Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1863 and GFF1864 are separated by 106 nucleotides GFF1864 and GFF1865 are separated by 96 nucleotides GFF1865 and GFF1866 are separated by 33 nucleotides
GFF1863 - Uncharacterized MFS-type transporter, at 537,429 to 538,742
GFF1863
GFF1864 - Transcriptional regulator, LysR family, at 538,849 to 539,802
GFF1864
GFF1865 - Transcriptional regulator, AraC family, at 539,899 to 540,690
GFF1865
GFF1866 - Dihydropyrimidinase (EC 3.5.2.2) @ D-hydantoinase (EC 3.5.2.2), at 540,724 to 542,148
GFF1866
Position (kb) 538
539
540 Strain fitness (log2 ratio) -1
0
1 at 537.850 kb on + strand, within GFF1863 at 537.850 kb on + strand, within GFF1863 at 537.851 kb on - strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.195 kb on + strand, within GFF1863 at 538.196 kb on - strand, within GFF1863 at 538.196 kb on - strand, within GFF1863 at 538.791 kb on - strand at 538.915 kb on + strand at 538.916 kb on - strand at 538.916 kb on - strand at 539.062 kb on + strand, within GFF1864 at 539.062 kb on + strand, within GFF1864 at 539.062 kb on + strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.063 kb on - strand, within GFF1864 at 539.326 kb on + strand, within GFF1864 at 539.681 kb on + strand, within GFF1864 at 539.695 kb on + strand, within GFF1864 at 539.893 kb on + strand at 539.894 kb on - strand at 539.944 kb on + strand at 539.945 kb on - strand at 539.945 kb on - strand at 539.945 kb on - strand at 540.155 kb on - strand, within GFF1865 at 540.484 kb on + strand, within GFF1865 at 540.484 kb on + strand, within GFF1865 at 540.485 kb on - strand, within GFF1865
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 537,850 + GFF1863 0.32 +0.4 537,850 + GFF1863 0.32 -0.7 537,851 - GFF1863 0.32 +0.4 538,195 + GFF1863 0.58 +0.9 538,195 + GFF1863 0.58 +1.5 538,195 + GFF1863 0.58 -0.5 538,195 + GFF1863 0.58 -0.6 538,196 - GFF1863 0.58 -1.2 538,196 - GFF1863 0.58 -1.6 538,791 - -0.2 538,915 + -0.5 538,916 - -0.5 538,916 - +0.2 539,062 + GFF1864 0.22 +0.1 539,062 + GFF1864 0.22 +0.2 539,062 + GFF1864 0.22 +0.2 539,063 - GFF1864 0.22 -0.8 539,063 - GFF1864 0.22 +0.5 539,063 - GFF1864 0.22 -0.3 539,063 - GFF1864 0.22 +0.6 539,063 - GFF1864 0.22 +1.0 539,326 + GFF1864 0.50 +0.1 539,681 + GFF1864 0.87 -0.1 539,695 + GFF1864 0.89 -0.0 539,893 + +0.2 539,894 - -0.5 539,944 + -0.5 539,945 - -0.2 539,945 - +1.1 539,945 - +0.4 540,155 - GFF1865 0.32 -1.5 540,484 + GFF1865 0.74 -0.4 540,484 + GFF1865 0.74 -0.9 540,485 - GFF1865 0.74 -1.1
Or see this region's nucleotide sequence