Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1838 and GFF1839 are separated by 22 nucleotides GFF1839 and GFF1840 are separated by 174 nucleotides
GFF1838 - Manganese transport protein MntH, at 505,659 to 506,912
GFF1838
GFF1839 - Integral membrane protein, at 506,935 to 507,714
GFF1839
GFF1840 - Xanthine dehydrogenase iron-sulfur subunit (EC 1.17.1.4) / Xanthine dehydrogenase, FAD binding subunit (EC 1.17.1.4), at 507,889 to 509,535
GFF1840
Position (kb) 506
507
508 Strain fitness (log2 ratio) -1
0
1 at 506.121 kb on + strand, within GFF1838 at 506.208 kb on + strand, within GFF1838 at 506.208 kb on + strand, within GFF1838 at 506.254 kb on - strand, within GFF1838 at 506.433 kb on + strand, within GFF1838 at 506.433 kb on + strand, within GFF1838 at 506.434 kb on - strand, within GFF1838 at 506.434 kb on - strand, within GFF1838 at 506.583 kb on + strand, within GFF1838 at 506.584 kb on - strand, within GFF1838 at 506.584 kb on - strand, within GFF1838 at 506.584 kb on - strand, within GFF1838 at 506.652 kb on + strand, within GFF1838 at 506.652 kb on + strand, within GFF1838 at 506.653 kb on - strand, within GFF1838 at 506.728 kb on - strand, within GFF1838 at 506.728 kb on - strand, within GFF1838 at 506.921 kb on + strand at 506.922 kb on - strand at 506.922 kb on - strand at 506.922 kb on - strand at 506.922 kb on - strand at 507.001 kb on + strand at 507.130 kb on + strand, within GFF1839 at 507.130 kb on + strand, within GFF1839 at 507.130 kb on + strand, within GFF1839 at 507.130 kb on + strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.131 kb on - strand, within GFF1839 at 507.427 kb on + strand, within GFF1839 at 507.427 kb on + strand, within GFF1839 at 507.427 kb on + strand, within GFF1839 at 507.427 kb on + strand, within GFF1839 at 507.428 kb on - strand, within GFF1839 at 507.428 kb on - strand, within GFF1839 at 507.539 kb on - strand, within GFF1839 at 507.578 kb on - strand, within GFF1839 at 507.578 kb on - strand, within GFF1839 at 507.578 kb on - strand, within GFF1839 at 507.773 kb on + strand at 507.774 kb on - strand at 507.774 kb on - strand at 507.774 kb on - strand at 507.782 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.796 kb on + strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.797 kb on - strand at 507.817 kb on + strand at 508.357 kb on + strand, within GFF1840 at 508.357 kb on + strand, within GFF1840 at 508.358 kb on - strand, within GFF1840 at 508.358 kb on - strand, within GFF1840 at 508.561 kb on + strand, within GFF1840 at 508.561 kb on + strand, within GFF1840 at 508.561 kb on + strand, within GFF1840 at 508.562 kb on - strand, within GFF1840 at 508.562 kb on - strand, within GFF1840 at 508.595 kb on + strand, within GFF1840
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 506,121 + GFF1838 0.37 -0.2 506,208 + GFF1838 0.44 +0.3 506,208 + GFF1838 0.44 +0.4 506,254 - GFF1838 0.47 -0.3 506,433 + GFF1838 0.62 -0.2 506,433 + GFF1838 0.62 +0.0 506,434 - GFF1838 0.62 -0.8 506,434 - GFF1838 0.62 +0.1 506,583 + GFF1838 0.74 +0.9 506,584 - GFF1838 0.74 -0.0 506,584 - GFF1838 0.74 -1.1 506,584 - GFF1838 0.74 -1.3 506,652 + GFF1838 0.79 -0.1 506,652 + GFF1838 0.79 -0.9 506,653 - GFF1838 0.79 -0.2 506,728 - GFF1838 0.85 -0.1 506,728 - GFF1838 0.85 -0.1 506,921 + +1.2 506,922 - -0.1 506,922 - +0.5 506,922 - -0.5 506,922 - +0.1 507,001 + -1.3 507,130 + GFF1839 0.25 +0.0 507,130 + GFF1839 0.25 -0.8 507,130 + GFF1839 0.25 +0.3 507,130 + GFF1839 0.25 -0.2 507,131 - GFF1839 0.25 -0.1 507,131 - GFF1839 0.25 +0.5 507,131 - GFF1839 0.25 -0.1 507,131 - GFF1839 0.25 +0.4 507,131 - GFF1839 0.25 -0.6 507,427 + GFF1839 0.63 +0.2 507,427 + GFF1839 0.63 -0.1 507,427 + GFF1839 0.63 +0.3 507,427 + GFF1839 0.63 +0.2 507,428 - GFF1839 0.63 -0.3 507,428 - GFF1839 0.63 -0.8 507,539 - GFF1839 0.77 +1.3 507,578 - GFF1839 0.82 -0.2 507,578 - GFF1839 0.82 -0.1 507,578 - GFF1839 0.82 -0.3 507,773 + +0.1 507,774 - +0.2 507,774 - -0.5 507,774 - +0.2 507,782 + -1.1 507,796 + -0.2 507,796 + -0.3 507,796 + +0.1 507,796 + +0.0 507,796 + -0.0 507,796 + -0.4 507,796 + -0.8 507,796 + -0.9 507,796 + -0.5 507,797 - +0.6 507,797 - -0.2 507,797 - -0.4 507,797 - +0.4 507,797 - +1.3 507,797 - -0.8 507,817 + -0.1 508,357 + GFF1840 0.28 -0.1 508,357 + GFF1840 0.28 -1.5 508,358 - GFF1840 0.28 -0.2 508,358 - GFF1840 0.28 +0.2 508,561 + GFF1840 0.41 -0.8 508,561 + GFF1840 0.41 -0.6 508,561 + GFF1840 0.41 +0.4 508,562 - GFF1840 0.41 +1.6 508,562 - GFF1840 0.41 -0.8 508,595 + GFF1840 0.43 -1.2
Or see this region's nucleotide sequence