Strain Fitness in Variovorax sp. SCN45 around GFF183

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF182 and GFF183 are separated by 193 nucleotidesGFF183 and GFF184 are separated by 110 nucleotides GFF182 - FIG00347566: hypothetical protein, at 212,984 to 214,801 GFF182 GFF183 - Virulence protein, at 214,995 to 215,351 GFF183 GFF184 - Adenylate cyclase (EC 4.6.1.1), at 215,462 to 216,349 GFF184 Position (kb) 214 215 216Strain fitness (log2 ratio) -2 -1 0 1 2at 214.038 kb on + strand, within GFF182at 214.039 kb on - strand, within GFF182at 214.039 kb on - strand, within GFF182at 214.039 kb on - strand, within GFF182at 214.077 kb on + strand, within GFF182at 214.077 kb on + strand, within GFF182at 214.077 kb on + strand, within GFF182at 214.077 kb on + strand, within GFF182at 214.077 kb on + strand, within GFF182at 214.078 kb on - strand, within GFF182at 214.078 kb on - strand, within GFF182at 214.137 kb on + strand, within GFF182at 214.138 kb on - strand, within GFF182at 214.138 kb on - strand, within GFF182at 214.138 kb on - strand, within GFF182at 214.221 kb on + strand, within GFF182at 214.222 kb on - strand, within GFF182at 214.222 kb on - strand, within GFF182at 214.374 kb on + strand, within GFF182at 214.374 kb on + strand, within GFF182at 214.374 kb on + strand, within GFF182at 214.374 kb on + strand, within GFF182at 214.374 kb on + strand, within GFF182at 214.374 kb on + strand, within GFF182at 214.374 kb on + strand, within GFF182at 214.375 kb on - strand, within GFF182at 214.375 kb on - strand, within GFF182at 214.375 kb on - strand, within GFF182at 214.375 kb on - strand, within GFF182at 214.375 kb on - strand, within GFF182at 214.375 kb on - strand, within GFF182at 214.449 kb on + strand, within GFF182at 214.450 kb on - strand, within GFF182at 214.450 kb on - strand, within GFF182at 214.548 kb on + strand, within GFF182at 214.554 kb on + strand, within GFF182at 214.872 kb on - strandat 214.911 kb on + strandat 214.911 kb on + strandat 214.922 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.011 kb on + strandat 215.012 kb on - strandat 215.012 kb on - strandat 215.012 kb on - strandat 215.014 kb on + strandat 215.014 kb on + strandat 215.014 kb on + strandat 215.015 kb on - strandat 215.015 kb on - strandat 215.015 kb on - strandat 215.015 kb on - strandat 215.036 kb on - strand, within GFF183at 215.053 kb on + strand, within GFF183at 215.054 kb on - strand, within GFF183at 215.054 kb on - strand, within GFF183at 215.056 kb on + strand, within GFF183at 215.056 kb on + strand, within GFF183at 215.057 kb on - strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.080 kb on + strand, within GFF183at 215.081 kb on - strand, within GFF183at 215.081 kb on - strand, within GFF183at 215.081 kb on - strand, within GFF183at 215.081 kb on - strand, within GFF183at 215.081 kb on - strand, within GFF183at 215.081 kb on - strand, within GFF183at 215.081 kb on - strand, within GFF183at 215.098 kb on + strand, within GFF183at 215.099 kb on - strand, within GFF183at 215.101 kb on + strand, within GFF183at 215.101 kb on + strand, within GFF183at 215.101 kb on + strand, within GFF183at 215.101 kb on + strand, within GFF183at 215.102 kb on - strand, within GFF183at 215.102 kb on - strand, within GFF183at 215.102 kb on - strand, within GFF183at 215.102 kb on - strand, within GFF183at 215.125 kb on + strand, within GFF183at 215.125 kb on + strand, within GFF183at 215.125 kb on + strand, within GFF183at 215.125 kb on + strand, within GFF183at 215.126 kb on - strand, within GFF183at 215.126 kb on - strand, within GFF183at 215.126 kb on - strand, within GFF183at 215.126 kb on - strand, within GFF183at 215.126 kb on - strand, within GFF183at 215.126 kb on - strand, within GFF183at 215.146 kb on + strand, within GFF183at 215.146 kb on + strand, within GFF183at 215.146 kb on + strand, within GFF183at 215.146 kb on + strand, within GFF183at 215.146 kb on + strand, within GFF183at 215.146 kb on + strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.147 kb on - strand, within GFF183at 215.149 kb on + strand, within GFF183at 215.149 kb on + strand, within GFF183at 215.149 kb on + strand, within GFF183at 215.149 kb on + strand, within GFF183at 215.149 kb on + strand, within GFF183at 215.149 kb on + strand, within GFF183at 215.149 kb on + strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.150 kb on - strand, within GFF183at 215.170 kb on + strand, within GFF183at 215.170 kb on + strand, within GFF183at 215.170 kb on + strand, within GFF183at 215.170 kb on + strand, within GFF183at 215.171 kb on - strand, within GFF183at 215.171 kb on - strand, within GFF183at 215.171 kb on - strand, within GFF183at 215.171 kb on - strand, within GFF183at 215.171 kb on - strand, within GFF183at 215.171 kb on - strand, within GFF183at 215.171 kb on - strand, within GFF183at 215.188 kb on + strand, within GFF183at 215.188 kb on + strand, within GFF183at 215.189 kb on - strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.191 kb on + strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.192 kb on - strand, within GFF183at 215.221 kb on + strand, within GFF183at 215.222 kb on - strand, within GFF183at 215.222 kb on - strand, within GFF183at 215.222 kb on - strand, within GFF183at 215.402 kb on - strandat 215.402 kb on - strandat 215.402 kb on - strandat 215.430 kb on + strandat 215.430 kb on + strandat 215.430 kb on + strandat 215.431 kb on - strandat 215.431 kb on - strandat 215.658 kb on + strand, within GFF184at 215.658 kb on + strand, within GFF184at 215.658 kb on + strand, within GFF184at 215.658 kb on + strand, within GFF184at 215.658 kb on + strand, within GFF184at 215.658 kb on + strand, within GFF184at 215.658 kb on + strand, within GFF184at 215.659 kb on - strand, within GFF184at 215.659 kb on - strand, within GFF184at 215.659 kb on - strand, within GFF184at 215.659 kb on - strand, within GFF184at 215.659 kb on - strand, within GFF184at 215.659 kb on - strand, within GFF184at 215.659 kb on - strand, within GFF184at 215.723 kb on + strand, within GFF184at 216.183 kb on + strand, within GFF184at 216.183 kb on + strand, within GFF184at 216.184 kb on - strand, within GFF184at 216.184 kb on - strand, within GFF184at 216.310 kb on + strandat 216.310 kb on + strandat 216.310 kb on + strandat 216.310 kb on + strandat 216.311 kb on - strandat 216.311 kb on - strandat 216.311 kb on - strandat 216.311 kb on - strandat 216.311 kb on - strandat 216.311 kb on - strandat 216.311 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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214,038 + GFF182 0.58 +0.3
214,039 - GFF182 0.58 +0.3
214,039 - GFF182 0.58 -0.5
214,039 - GFF182 0.58 -0.1
214,077 + GFF182 0.60 +0.4
214,077 + GFF182 0.60 -0.1
214,077 + GFF182 0.60 -0.2
214,077 + GFF182 0.60 -0.1
214,077 + GFF182 0.60 -0.1
214,078 - GFF182 0.60 +0.0
214,078 - GFF182 0.60 +0.6
214,137 + GFF182 0.63 +0.4
214,138 - GFF182 0.63 +0.1
214,138 - GFF182 0.63 -0.2
214,138 - GFF182 0.63 +0.6
214,221 + GFF182 0.68 -0.4
214,222 - GFF182 0.68 +0.1
214,222 - GFF182 0.68 +1.0
214,374 + GFF182 0.76 -0.4
214,374 + GFF182 0.76 +0.0
214,374 + GFF182 0.76 +0.9
214,374 + GFF182 0.76 -0.3
214,374 + GFF182 0.76 -0.3
214,374 + GFF182 0.76 +0.3
214,374 + GFF182 0.76 +0.2
214,375 - GFF182 0.77 +0.0
214,375 - GFF182 0.77 -0.2
214,375 - GFF182 0.77 -0.7
214,375 - GFF182 0.77 +1.9
214,375 - GFF182 0.77 +0.5
214,375 - GFF182 0.77 +0.4
214,449 + GFF182 0.81 +0.7
214,450 - GFF182 0.81 -1.3
214,450 - GFF182 0.81 -0.4
214,548 + GFF182 0.86 +0.4
214,554 + GFF182 0.86 -0.3
214,872 - +0.4
214,911 + +0.1
214,911 + -0.0
214,922 + +1.6
215,011 + +0.6
215,011 + -0.1
215,011 + +0.3
215,011 + +1.0
215,011 + +0.6
215,011 + +2.7
215,011 + +0.7
215,011 + -1.4
215,011 + -0.5
215,011 + +0.2
215,011 + +2.0
215,012 - +0.9
215,012 - +0.0
215,012 - -1.0
215,014 + +0.2
215,014 + +0.6
215,014 + +0.3
215,015 - +1.9
215,015 - -0.4
215,015 - -0.9
215,015 - -0.1
215,036 - GFF183 0.11 +0.9
215,053 + GFF183 0.16 +0.5
215,054 - GFF183 0.17 -0.3
215,054 - GFF183 0.17 -0.9
215,056 + GFF183 0.17 -0.6
215,056 + GFF183 0.17 +0.6
215,057 - GFF183 0.17 -0.8
215,080 + GFF183 0.24 -1.5
215,080 + GFF183 0.24 +0.5
215,080 + GFF183 0.24 -0.1
215,080 + GFF183 0.24 -1.4
215,080 + GFF183 0.24 +1.2
215,080 + GFF183 0.24 +0.6
215,080 + GFF183 0.24 -0.7
215,080 + GFF183 0.24 +0.4
215,080 + GFF183 0.24 +0.3
215,080 + GFF183 0.24 +0.8
215,080 + GFF183 0.24 -0.1
215,080 + GFF183 0.24 +0.3
215,080 + GFF183 0.24 +0.0
215,080 + GFF183 0.24 +0.6
215,081 - GFF183 0.24 -0.6
215,081 - GFF183 0.24 +0.2
215,081 - GFF183 0.24 +0.0
215,081 - GFF183 0.24 -1.6
215,081 - GFF183 0.24 -1.1
215,081 - GFF183 0.24 +1.2
215,081 - GFF183 0.24 -0.2
215,098 + GFF183 0.29 -0.5
215,099 - GFF183 0.29 +0.6
215,101 + GFF183 0.30 +0.7
215,101 + GFF183 0.30 +0.4
215,101 + GFF183 0.30 -0.2
215,101 + GFF183 0.30 +0.8
215,102 - GFF183 0.30 +0.5
215,102 - GFF183 0.30 +0.3
215,102 - GFF183 0.30 +0.1
215,102 - GFF183 0.30 -0.1
215,125 + GFF183 0.36 -0.2
215,125 + GFF183 0.36 +0.2
215,125 + GFF183 0.36 -0.1
215,125 + GFF183 0.36 -0.4
215,126 - GFF183 0.37 -0.6
215,126 - GFF183 0.37 +0.6
215,126 - GFF183 0.37 +0.1
215,126 - GFF183 0.37 +0.3
215,126 - GFF183 0.37 -0.6
215,126 - GFF183 0.37 +0.2
215,146 + GFF183 0.42 +0.9
215,146 + GFF183 0.42 +0.1
215,146 + GFF183 0.42 +0.4
215,146 + GFF183 0.42 +0.6
215,146 + GFF183 0.42 -0.8
215,146 + GFF183 0.42 +0.8
215,147 - GFF183 0.43 +0.8
215,147 - GFF183 0.43 +0.6
215,147 - GFF183 0.43 +0.8
215,147 - GFF183 0.43 -0.4
215,147 - GFF183 0.43 +1.0
215,147 - GFF183 0.43 +0.1
215,147 - GFF183 0.43 -0.4
215,147 - GFF183 0.43 +0.0
215,147 - GFF183 0.43 +0.6
215,149 + GFF183 0.43 +0.5
215,149 + GFF183 0.43 -0.5
215,149 + GFF183 0.43 +0.2
215,149 + GFF183 0.43 +0.6
215,149 + GFF183 0.43 -0.3
215,149 + GFF183 0.43 -0.2
215,149 + GFF183 0.43 -0.5
215,150 - GFF183 0.43 +0.0
215,150 - GFF183 0.43 +0.4
215,150 - GFF183 0.43 -0.8
215,150 - GFF183 0.43 -0.2
215,150 - GFF183 0.43 -0.5
215,150 - GFF183 0.43 +0.0
215,150 - GFF183 0.43 -0.1
215,150 - GFF183 0.43 +0.5
215,150 - GFF183 0.43 -0.2
215,150 - GFF183 0.43 -0.1
215,150 - GFF183 0.43 -0.4
215,150 - GFF183 0.43 +0.6
215,150 - GFF183 0.43 +0.5
215,150 - GFF183 0.43 -0.3
215,150 - GFF183 0.43 -0.1
215,170 + GFF183 0.49 -0.1
215,170 + GFF183 0.49 +0.3
215,170 + GFF183 0.49 +0.4
215,170 + GFF183 0.49 +0.0
215,171 - GFF183 0.49 -0.5
215,171 - GFF183 0.49 +1.0
215,171 - GFF183 0.49 +0.1
215,171 - GFF183 0.49 +0.9
215,171 - GFF183 0.49 +1.2
215,171 - GFF183 0.49 +0.3
215,171 - GFF183 0.49 -0.4
215,188 + GFF183 0.54 +0.1
215,188 + GFF183 0.54 +0.9
215,189 - GFF183 0.54 +0.7
215,191 + GFF183 0.55 +0.0
215,191 + GFF183 0.55 +0.2
215,191 + GFF183 0.55 -0.3
215,191 + GFF183 0.55 +0.2
215,191 + GFF183 0.55 -2.1
215,191 + GFF183 0.55 +0.2
215,191 + GFF183 0.55 -1.6
215,191 + GFF183 0.55 +0.5
215,191 + GFF183 0.55 +0.7
215,191 + GFF183 0.55 +0.6
215,192 - GFF183 0.55 +0.1
215,192 - GFF183 0.55 -0.6
215,192 - GFF183 0.55 +0.4
215,192 - GFF183 0.55 +0.3
215,192 - GFF183 0.55 +0.9
215,192 - GFF183 0.55 +0.3
215,192 - GFF183 0.55 +0.0
215,192 - GFF183 0.55 +0.5
215,192 - GFF183 0.55 -0.4
215,192 - GFF183 0.55 -1.2
215,221 + GFF183 0.63 +0.9
215,222 - GFF183 0.64 -1.0
215,222 - GFF183 0.64 +0.6
215,222 - GFF183 0.64 -0.1
215,402 - -0.1
215,402 - -0.5
215,402 - +0.6
215,430 + +0.5
215,430 + +0.7
215,430 + +2.3
215,431 - +1.2
215,431 - +0.5
215,658 + GFF184 0.22 +0.7
215,658 + GFF184 0.22 -0.2
215,658 + GFF184 0.22 +0.9
215,658 + GFF184 0.22 -2.2
215,658 + GFF184 0.22 +0.0
215,658 + GFF184 0.22 +1.6
215,658 + GFF184 0.22 +1.2
215,659 - GFF184 0.22 +1.1
215,659 - GFF184 0.22 -1.2
215,659 - GFF184 0.22 -0.2
215,659 - GFF184 0.22 +0.3
215,659 - GFF184 0.22 +0.9
215,659 - GFF184 0.22 +0.7
215,659 - GFF184 0.22 +0.6
215,723 + GFF184 0.29 +1.0
216,183 + GFF184 0.81 +0.2
216,183 + GFF184 0.81 +2.1
216,184 - GFF184 0.81 +0.2
216,184 - GFF184 0.81 +0.1
216,310 + +0.8
216,310 + +1.4
216,310 + +0.1
216,310 + +2.3
216,311 - +0.9
216,311 - +0.7
216,311 - +0.0
216,311 - -0.1
216,311 - +1.6
216,311 - +1.4
216,311 - +2.3

Or see this region's nucleotide sequence