Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1729 and GFF1730 are separated by 706 nucleotides GFF1730 and GFF1731 are separated by 122 nucleotides
GFF1729 - HIPA PROTEIN, at 389,145 to 390,371
GFF1729
GFF1730 - Dihydrofolate reductase homolog, at 391,078 to 391,734
GFF1730
GFF1731 - Short-chain dehydrogenase/reductase SDR?, at 391,857 to 392,612
GFF1731
Position (kb) 391
392 Strain fitness (log2 ratio) -2
-1
0
1 at 390.087 kb on + strand, within GFF1729 at 390.087 kb on + strand, within GFF1729 at 390.087 kb on + strand, within GFF1729 at 390.087 kb on + strand, within GFF1729 at 390.087 kb on + strand, within GFF1729 at 390.087 kb on + strand, within GFF1729 at 390.088 kb on - strand, within GFF1729 at 390.122 kb on - strand, within GFF1729 at 390.170 kb on + strand, within GFF1729 at 390.171 kb on - strand, within GFF1729 at 390.280 kb on + strand at 390.280 kb on + strand at 390.281 kb on - strand at 390.281 kb on - strand at 390.281 kb on - strand at 390.281 kb on - strand at 390.281 kb on - strand at 390.349 kb on + strand at 390.349 kb on + strand at 390.349 kb on + strand at 390.350 kb on - strand at 390.350 kb on - strand at 390.350 kb on - strand at 390.352 kb on + strand at 390.352 kb on + strand at 390.353 kb on - strand at 390.353 kb on - strand at 390.442 kb on + strand at 390.443 kb on - strand at 390.443 kb on - strand at 390.443 kb on - strand at 390.628 kb on + strand at 390.628 kb on + strand at 390.629 kb on - strand at 390.629 kb on - strand at 390.629 kb on - strand at 390.653 kb on + strand at 390.653 kb on + strand at 390.654 kb on - strand at 390.654 kb on - strand at 390.654 kb on - strand at 390.654 kb on - strand at 390.654 kb on - strand at 390.708 kb on + strand at 390.709 kb on - strand at 390.709 kb on - strand at 390.791 kb on + strand at 390.791 kb on + strand at 390.791 kb on + strand at 390.792 kb on - strand at 391.145 kb on + strand, within GFF1730 at 391.146 kb on - strand, within GFF1730 at 391.250 kb on + strand, within GFF1730 at 391.424 kb on + strand, within GFF1730 at 391.425 kb on - strand, within GFF1730 at 391.723 kb on + strand at 391.724 kb on - strand at 391.770 kb on - strand at 391.819 kb on - strand at 391.819 kb on - strand at 391.996 kb on + strand, within GFF1731 at 391.997 kb on - strand, within GFF1731 at 391.997 kb on - strand, within GFF1731 at 391.997 kb on - strand, within GFF1731 at 391.997 kb on - strand, within GFF1731 at 392.062 kb on + strand, within GFF1731 at 392.062 kb on + strand, within GFF1731 at 392.062 kb on + strand, within GFF1731 at 392.062 kb on + strand, within GFF1731 at 392.063 kb on - strand, within GFF1731 at 392.158 kb on + strand, within GFF1731 at 392.158 kb on + strand, within GFF1731 at 392.158 kb on + strand, within GFF1731 at 392.158 kb on + strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.159 kb on - strand, within GFF1731 at 392.349 kb on + strand, within GFF1731 at 392.350 kb on - strand, within GFF1731
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 390,087 + GFF1729 0.77 -0.9 390,087 + GFF1729 0.77 +0.3 390,087 + GFF1729 0.77 -0.6 390,087 + GFF1729 0.77 +1.4 390,087 + GFF1729 0.77 -0.3 390,087 + GFF1729 0.77 +0.4 390,088 - GFF1729 0.77 +0.6 390,122 - GFF1729 0.80 -0.2 390,170 + GFF1729 0.84 -0.2 390,171 - GFF1729 0.84 -1.1 390,280 + -0.7 390,280 + -0.3 390,281 - -0.1 390,281 - -0.3 390,281 - +0.3 390,281 - +0.0 390,281 - +0.2 390,349 + -0.6 390,349 + -0.2 390,349 + +0.2 390,350 - +1.1 390,350 - -0.9 390,350 - -0.7 390,352 + -0.5 390,352 + -0.2 390,353 - -0.1 390,353 - +0.3 390,442 + -0.8 390,443 - -0.8 390,443 - -2.4 390,443 - -0.8 390,628 + -1.3 390,628 + -1.1 390,629 - -0.8 390,629 - +0.0 390,629 - -0.1 390,653 + -0.3 390,653 + -0.9 390,654 - -2.0 390,654 - +0.0 390,654 - -1.0 390,654 - -0.6 390,654 - -0.3 390,708 + -0.7 390,709 - -1.0 390,709 - -0.4 390,791 + +1.2 390,791 + +0.8 390,791 + +0.6 390,792 - +1.2 391,145 + GFF1730 0.10 -0.7 391,146 - GFF1730 0.10 -0.5 391,250 + GFF1730 0.26 -0.5 391,424 + GFF1730 0.53 +0.4 391,425 - GFF1730 0.53 -2.2 391,723 + -0.1 391,724 - -1.0 391,770 - -1.3 391,819 - -1.3 391,819 - -0.2 391,996 + GFF1731 0.18 -0.3 391,997 - GFF1731 0.19 -0.5 391,997 - GFF1731 0.19 +0.8 391,997 - GFF1731 0.19 +0.2 391,997 - GFF1731 0.19 -0.8 392,062 + GFF1731 0.27 +0.8 392,062 + GFF1731 0.27 -0.2 392,062 + GFF1731 0.27 -0.1 392,062 + GFF1731 0.27 -1.3 392,063 - GFF1731 0.27 -0.4 392,158 + GFF1731 0.40 -0.5 392,158 + GFF1731 0.40 -0.9 392,158 + GFF1731 0.40 -0.8 392,158 + GFF1731 0.40 -0.2 392,159 - GFF1731 0.40 -0.6 392,159 - GFF1731 0.40 -0.3 392,159 - GFF1731 0.40 +0.0 392,159 - GFF1731 0.40 -0.6 392,159 - GFF1731 0.40 +0.1 392,349 + GFF1731 0.65 +0.4 392,350 - GFF1731 0.65 -0.3
Or see this region's nucleotide sequence