Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1726 and GFF1727 are separated by 89 nucleotides GFF1727 and GFF1728 are separated by 188 nucleotides GFF1728 and GFF1729 are separated by 110 nucleotides
GFF1726 - Filamentous haemagglutinin family outer membrane protein associated with VreARI signalling system, at 374,559 to 386,978
GFF1726
GFF1727 - no description, at 387,068 to 387,604
GFF1727
GFF1728 - D-alanyl-D-alanine carboxypeptidase (EC 3.4.16.4), at 387,793 to 389,034
GFF1728
GFF1729 - HIPA PROTEIN, at 389,145 to 390,371
GFF1729
Position (kb) 387
388
389
390 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 386.976 kb on + strand at 387.116 kb on + strand at 387.116 kb on + strand at 387.116 kb on + strand at 387.117 kb on - strand at 387.117 kb on - strand at 387.245 kb on + strand, within GFF1727 at 387.245 kb on + strand, within GFF1727 at 387.245 kb on + strand, within GFF1727 at 387.246 kb on - strand, within GFF1727 at 387.246 kb on - strand, within GFF1727 at 387.246 kb on - strand, within GFF1727 at 387.246 kb on - strand, within GFF1727 at 387.246 kb on - strand, within GFF1727 at 387.246 kb on - strand, within GFF1727 at 387.246 kb on - strand, within GFF1727 at 387.251 kb on + strand, within GFF1727 at 387.252 kb on - strand, within GFF1727 at 387.444 kb on + strand, within GFF1727 at 387.549 kb on - strand, within GFF1727 at 387.682 kb on - strand at 387.786 kb on + strand at 387.786 kb on + strand at 387.786 kb on + strand at 387.787 kb on - strand at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.198 kb on + strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.199 kb on - strand, within GFF1728 at 388.465 kb on + strand, within GFF1728 at 388.465 kb on + strand, within GFF1728 at 388.465 kb on + strand, within GFF1728 at 388.466 kb on - strand, within GFF1728 at 388.466 kb on - strand, within GFF1728 at 388.466 kb on - strand, within GFF1728 at 388.478 kb on - strand, within GFF1728 at 388.478 kb on - strand, within GFF1728 at 388.498 kb on + strand, within GFF1728 at 388.499 kb on - strand, within GFF1728 at 388.499 kb on - strand, within GFF1728 at 388.499 kb on - strand, within GFF1728 at 388.499 kb on - strand, within GFF1728 at 388.499 kb on - strand, within GFF1728 at 388.499 kb on - strand, within GFF1728 at 388.537 kb on + strand, within GFF1728 at 388.537 kb on + strand, within GFF1728 at 388.537 kb on + strand, within GFF1728 at 388.538 kb on - strand, within GFF1728 at 388.538 kb on - strand, within GFF1728 at 388.575 kb on + strand, within GFF1728 at 388.575 kb on + strand, within GFF1728 at 388.575 kb on + strand, within GFF1728 at 388.576 kb on - strand, within GFF1728 at 388.576 kb on - strand, within GFF1728 at 388.576 kb on - strand, within GFF1728 at 388.576 kb on - strand, within GFF1728 at 388.576 kb on - strand, within GFF1728 at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.998 kb on + strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 388.999 kb on - strand at 389.032 kb on + strand at 389.032 kb on + strand at 389.032 kb on + strand at 389.033 kb on - strand at 389.033 kb on - strand at 389.033 kb on - strand at 389.033 kb on - strand at 389.146 kb on + strand at 389.146 kb on + strand at 389.146 kb on + strand at 389.147 kb on - strand at 389.147 kb on - strand at 389.208 kb on + strand at 389.208 kb on + strand at 389.208 kb on + strand at 389.209 kb on - strand at 389.209 kb on - strand at 389.393 kb on - strand, within GFF1729 at 389.404 kb on + strand, within GFF1729 at 389.404 kb on + strand, within GFF1729 at 389.405 kb on - strand, within GFF1729 at 389.405 kb on - strand, within GFF1729 at 389.405 kb on - strand, within GFF1729 at 389.564 kb on - strand, within GFF1729 at 389.572 kb on + strand, within GFF1729 at 389.572 kb on + strand, within GFF1729 at 389.573 kb on - strand, within GFF1729 at 389.573 kb on - strand, within GFF1729 at 389.573 kb on - strand, within GFF1729 at 389.624 kb on + strand, within GFF1729 at 389.624 kb on + strand, within GFF1729 at 389.624 kb on + strand, within GFF1729 at 389.624 kb on + strand, within GFF1729 at 389.624 kb on + strand, within GFF1729 at 389.624 kb on + strand, within GFF1729 at 389.625 kb on - strand, within GFF1729 at 389.625 kb on - strand, within GFF1729 at 389.625 kb on - strand, within GFF1729 at 389.625 kb on - strand, within GFF1729 at 389.696 kb on + strand, within GFF1729 at 389.696 kb on + strand, within GFF1729 at 389.697 kb on - strand, within GFF1729 at 389.697 kb on - strand, within GFF1729 at 389.697 kb on - strand, within GFF1729 at 389.697 kb on - strand, within GFF1729 at 389.704 kb on + strand, within GFF1729 at 389.704 kb on + strand, within GFF1729 at 389.704 kb on + strand, within GFF1729 at 389.705 kb on - strand, within GFF1729 at 389.705 kb on - strand, within GFF1729 at 389.705 kb on - strand, within GFF1729 at 389.752 kb on + strand, within GFF1729 at 389.752 kb on + strand, within GFF1729 at 389.752 kb on + strand, within GFF1729 at 389.752 kb on + strand, within GFF1729 at 389.752 kb on + strand, within GFF1729 at 389.752 kb on + strand, within GFF1729 at 389.752 kb on + strand, within GFF1729 at 389.753 kb on - strand, within GFF1729 at 389.866 kb on + strand, within GFF1729 at 389.866 kb on + strand, within GFF1729 at 389.866 kb on + strand, within GFF1729 at 389.867 kb on - strand, within GFF1729 at 389.867 kb on - strand, within GFF1729 at 389.991 kb on + strand, within GFF1729 at 389.991 kb on + strand, within GFF1729 at 389.991 kb on + strand, within GFF1729 at 389.992 kb on - strand, within GFF1729 at 389.992 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729 at 390.032 kb on - strand, within GFF1729
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 386,976 + -0.2 387,116 + -1.0 387,116 + -1.0 387,116 + -0.4 387,117 - -0.4 387,117 - +0.1 387,245 + GFF1727 0.33 -0.6 387,245 + GFF1727 0.33 +0.3 387,245 + GFF1727 0.33 +0.1 387,246 - GFF1727 0.33 -0.2 387,246 - GFF1727 0.33 -0.2 387,246 - GFF1727 0.33 +0.1 387,246 - GFF1727 0.33 +1.1 387,246 - GFF1727 0.33 -1.5 387,246 - GFF1727 0.33 -1.6 387,246 - GFF1727 0.33 -1.0 387,251 + GFF1727 0.34 -0.1 387,252 - GFF1727 0.34 -0.5 387,444 + GFF1727 0.70 -0.7 387,549 - GFF1727 0.90 +0.1 387,682 - -0.5 387,786 + -0.2 387,786 + -1.0 387,786 + +0.0 387,787 - -0.1 388,198 + GFF1728 0.33 +0.1 388,198 + GFF1728 0.33 +1.8 388,198 + GFF1728 0.33 -0.7 388,198 + GFF1728 0.33 +0.4 388,198 + GFF1728 0.33 +0.2 388,198 + GFF1728 0.33 -0.1 388,198 + GFF1728 0.33 +0.7 388,198 + GFF1728 0.33 -0.9 388,198 + GFF1728 0.33 +0.1 388,198 + GFF1728 0.33 -1.8 388,199 - GFF1728 0.33 -0.3 388,199 - GFF1728 0.33 -0.5 388,199 - GFF1728 0.33 -0.0 388,199 - GFF1728 0.33 +0.4 388,199 - GFF1728 0.33 -0.2 388,199 - GFF1728 0.33 +1.2 388,199 - GFF1728 0.33 +0.2 388,199 - GFF1728 0.33 -1.3 388,199 - GFF1728 0.33 -0.6 388,199 - GFF1728 0.33 -0.4 388,199 - GFF1728 0.33 +2.2 388,465 + GFF1728 0.54 -0.4 388,465 + GFF1728 0.54 +1.0 388,465 + GFF1728 0.54 -0.6 388,466 - GFF1728 0.54 +2.1 388,466 - GFF1728 0.54 +0.1 388,466 - GFF1728 0.54 -2.0 388,478 - GFF1728 0.55 -0.1 388,478 - GFF1728 0.55 -0.2 388,498 + GFF1728 0.57 +0.0 388,499 - GFF1728 0.57 +1.4 388,499 - GFF1728 0.57 -0.3 388,499 - GFF1728 0.57 +0.0 388,499 - GFF1728 0.57 -0.2 388,499 - GFF1728 0.57 +0.8 388,499 - GFF1728 0.57 +0.2 388,537 + GFF1728 0.60 -0.2 388,537 + GFF1728 0.60 -0.6 388,537 + GFF1728 0.60 +0.8 388,538 - GFF1728 0.60 +1.1 388,538 - GFF1728 0.60 +0.5 388,575 + GFF1728 0.63 -0.3 388,575 + GFF1728 0.63 -0.6 388,575 + GFF1728 0.63 +0.4 388,576 - GFF1728 0.63 -0.9 388,576 - GFF1728 0.63 +1.2 388,576 - GFF1728 0.63 -1.0 388,576 - GFF1728 0.63 +1.5 388,576 - GFF1728 0.63 -1.0 388,998 + -0.1 388,998 + +0.0 388,998 + -0.4 388,998 + -1.9 388,998 + -0.1 388,998 + +0.1 388,998 + +0.2 388,998 + -0.0 388,998 + +0.1 388,998 + -1.2 388,998 + +0.3 388,999 - -0.1 388,999 - -0.3 388,999 - +0.6 388,999 - -0.4 388,999 - -0.9 388,999 - -0.3 388,999 - -1.0 388,999 - -0.2 388,999 - -0.1 388,999 - +0.2 388,999 - +0.0 388,999 - -0.5 388,999 - -0.7 388,999 - -0.7 389,032 + -0.2 389,032 + -0.8 389,032 + -0.4 389,033 - +0.1 389,033 - +0.1 389,033 - +0.2 389,033 - -0.4 389,146 + -0.6 389,146 + -0.5 389,146 + +0.1 389,147 - +0.2 389,147 - -0.4 389,208 + -0.1 389,208 + +0.8 389,208 + -0.7 389,209 - -0.1 389,209 - -0.1 389,393 - GFF1729 0.20 -0.2 389,404 + GFF1729 0.21 +0.3 389,404 + GFF1729 0.21 +0.6 389,405 - GFF1729 0.21 +1.8 389,405 - GFF1729 0.21 -0.5 389,405 - GFF1729 0.21 -0.6 389,564 - GFF1729 0.34 -0.1 389,572 + GFF1729 0.35 +1.2 389,572 + GFF1729 0.35 +0.8 389,573 - GFF1729 0.35 +0.3 389,573 - GFF1729 0.35 +0.8 389,573 - GFF1729 0.35 -0.4 389,624 + GFF1729 0.39 -0.5 389,624 + GFF1729 0.39 -0.6 389,624 + GFF1729 0.39 -0.9 389,624 + GFF1729 0.39 -0.5 389,624 + GFF1729 0.39 -0.8 389,624 + GFF1729 0.39 +1.4 389,625 - GFF1729 0.39 +0.1 389,625 - GFF1729 0.39 -0.5 389,625 - GFF1729 0.39 +0.0 389,625 - GFF1729 0.39 +0.2 389,696 + GFF1729 0.45 -1.8 389,696 + GFF1729 0.45 +1.4 389,697 - GFF1729 0.45 -1.2 389,697 - GFF1729 0.45 -1.1 389,697 - GFF1729 0.45 +0.8 389,697 - GFF1729 0.45 +0.2 389,704 + GFF1729 0.46 +0.0 389,704 + GFF1729 0.46 -0.0 389,704 + GFF1729 0.46 -2.9 389,705 - GFF1729 0.46 -0.5 389,705 - GFF1729 0.46 -0.4 389,705 - GFF1729 0.46 -0.1 389,752 + GFF1729 0.49 +0.6 389,752 + GFF1729 0.49 +1.4 389,752 + GFF1729 0.49 -0.7 389,752 + GFF1729 0.49 +0.4 389,752 + GFF1729 0.49 -0.3 389,752 + GFF1729 0.49 -0.4 389,752 + GFF1729 0.49 +0.7 389,753 - GFF1729 0.50 -0.8 389,866 + GFF1729 0.59 +0.6 389,866 + GFF1729 0.59 -0.3 389,866 + GFF1729 0.59 -0.8 389,867 - GFF1729 0.59 -0.4 389,867 - GFF1729 0.59 +1.1 389,991 + GFF1729 0.69 +0.2 389,991 + GFF1729 0.69 +0.8 389,991 + GFF1729 0.69 -1.6 389,992 - GFF1729 0.69 +0.1 389,992 - GFF1729 0.69 +0.1 390,032 - GFF1729 0.72 +0.5 390,032 - GFF1729 0.72 +1.1 390,032 - GFF1729 0.72 -0.2 390,032 - GFF1729 0.72 -0.5 390,032 - GFF1729 0.72 +1.2 390,032 - GFF1729 0.72 -1.2 390,032 - GFF1729 0.72 +0.5 390,032 - GFF1729 0.72 -1.3 390,032 - GFF1729 0.72 -0.8
Or see this region's nucleotide sequence