Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1707 and GFF1708 are separated by 1 nucleotides GFF1708 and GFF1709 are separated by 347 nucleotides GFF1709 and GFF1710 are separated by 11 nucleotides GFF1710 and GFF1711 are separated by 424 nucleotides
GFF1707 - no description, at 354,207 to 354,416
GFF1707
GFF1708 - no description, at 354,418 to 354,618
GFF1708
GFF1709 - no description, at 354,966 to 355,295
GFF1709
GFF1710 - hypothetical protein, at 355,307 to 356,326
GFF1710
GFF1711 - DUF3701 domain / Site-specific tyrosine recombinase, at 356,751 to 358,595
GFF1711
Position (kb) 355
356
357 Strain fitness (log2 ratio) -2
-1
0
1
2 at 354.424 kb on + strand at 354.591 kb on + strand, within GFF1708 at 354.591 kb on + strand, within GFF1708 at 354.591 kb on + strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.592 kb on - strand, within GFF1708 at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.618 kb on + strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.619 kb on - strand at 354.671 kb on + strand at 354.672 kb on - strand at 354.749 kb on + strand at 354.750 kb on - strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.849 kb on + strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.850 kb on - strand at 354.973 kb on - strand at 354.973 kb on - strand at 355.145 kb on + strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.146 kb on - strand, within GFF1709 at 355.396 kb on + strand at 355.397 kb on - strand at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.410 kb on + strand, within GFF1710 at 355.411 kb on - strand, within GFF1710 at 355.411 kb on - strand, within GFF1710 at 355.575 kb on + strand, within GFF1710 at 355.576 kb on - strand, within GFF1710 at 355.728 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.815 kb on + strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.816 kb on - strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.877 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.953 kb on + strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 355.954 kb on - strand, within GFF1710 at 356.327 kb on - strand at 356.362 kb on + strand at 356.362 kb on + strand at 356.363 kb on - strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.489 kb on + strand at 356.490 kb on - strand at 356.490 kb on - strand at 356.648 kb on + strand at 356.648 kb on + strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.649 kb on - strand at 356.752 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.776 kb on + strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.777 kb on - strand at 356.980 kb on + strand, within GFF1711 at 357.283 kb on + strand, within GFF1711 at 357.283 kb on + strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711 at 357.284 kb on - strand, within GFF1711
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 354,424 + -0.3 354,591 + GFF1708 0.86 -0.8 354,591 + GFF1708 0.86 +0.2 354,591 + GFF1708 0.86 +0.0 354,592 - GFF1708 0.87 +0.0 354,592 - GFF1708 0.87 -0.6 354,592 - GFF1708 0.87 +0.3 354,592 - GFF1708 0.87 -0.5 354,618 + +1.0 354,618 + -0.3 354,618 + +0.6 354,618 + -0.1 354,618 + -0.0 354,618 + -0.2 354,618 + -0.1 354,618 + +1.8 354,618 + -0.1 354,618 + -0.5 354,619 - -1.7 354,619 - -0.0 354,619 - -0.5 354,619 - +0.1 354,671 + +0.7 354,672 - +0.4 354,749 + +0.5 354,750 - -0.9 354,849 + -0.1 354,849 + +0.7 354,849 + -0.5 354,849 + -0.8 354,849 + -1.2 354,849 + -0.6 354,849 + +0.0 354,849 + +0.3 354,850 - +0.8 354,850 - +0.4 354,850 - -0.2 354,850 - -0.6 354,850 - +0.1 354,973 - -0.3 354,973 - +1.2 355,145 + GFF1709 0.54 -0.8 355,146 - GFF1709 0.55 +0.3 355,146 - GFF1709 0.55 -0.7 355,146 - GFF1709 0.55 -0.8 355,146 - GFF1709 0.55 -0.2 355,146 - GFF1709 0.55 -0.3 355,146 - GFF1709 0.55 +0.2 355,396 + -1.1 355,397 - +0.1 355,410 + GFF1710 0.10 -0.2 355,410 + GFF1710 0.10 -1.2 355,410 + GFF1710 0.10 +0.5 355,410 + GFF1710 0.10 +0.4 355,410 + GFF1710 0.10 -1.9 355,410 + GFF1710 0.10 -0.1 355,411 - GFF1710 0.10 +0.3 355,411 - GFF1710 0.10 +0.0 355,575 + GFF1710 0.26 +0.3 355,576 - GFF1710 0.26 -1.9 355,728 + GFF1710 0.41 -0.9 355,815 + GFF1710 0.50 -0.8 355,815 + GFF1710 0.50 -0.3 355,815 + GFF1710 0.50 -1.5 355,815 + GFF1710 0.50 -0.4 355,815 + GFF1710 0.50 -0.4 355,815 + GFF1710 0.50 -0.5 355,815 + GFF1710 0.50 -0.8 355,815 + GFF1710 0.50 +1.4 355,815 + GFF1710 0.50 -0.8 355,816 - GFF1710 0.50 +0.2 355,816 - GFF1710 0.50 -1.3 355,816 - GFF1710 0.50 +0.2 355,816 - GFF1710 0.50 -1.7 355,816 - GFF1710 0.50 -0.2 355,816 - GFF1710 0.50 -0.9 355,816 - GFF1710 0.50 +0.4 355,816 - GFF1710 0.50 -0.8 355,816 - GFF1710 0.50 -0.5 355,816 - GFF1710 0.50 +0.3 355,816 - GFF1710 0.50 +0.2 355,816 - GFF1710 0.50 -0.3 355,877 + GFF1710 0.56 +1.1 355,877 + GFF1710 0.56 +1.3 355,877 + GFF1710 0.56 -0.5 355,953 + GFF1710 0.63 +0.4 355,953 + GFF1710 0.63 -1.0 355,953 + GFF1710 0.63 +0.1 355,953 + GFF1710 0.63 +0.4 355,954 - GFF1710 0.63 -0.7 355,954 - GFF1710 0.63 -0.2 355,954 - GFF1710 0.63 -0.3 356,327 - -0.5 356,362 + -0.8 356,362 + +0.5 356,363 - -0.3 356,489 + +0.1 356,489 + -0.7 356,489 + -1.1 356,489 + -0.6 356,490 - -0.8 356,490 - +0.5 356,648 + -0.7 356,648 + -0.3 356,649 - -0.3 356,649 - -0.3 356,649 - +0.0 356,649 - +0.5 356,649 - +0.4 356,649 - +0.2 356,649 - +0.0 356,752 + -1.5 356,776 + +1.8 356,776 + +0.2 356,776 + +0.8 356,776 + +0.7 356,777 - +0.2 356,777 - +0.1 356,777 - -0.2 356,777 - -1.9 356,777 - -0.6 356,980 + GFF1711 0.12 -1.1 357,283 + GFF1711 0.29 -0.0 357,283 + GFF1711 0.29 -0.5 357,284 - GFF1711 0.29 -0.2 357,284 - GFF1711 0.29 -0.3 357,284 - GFF1711 0.29 +0.2 357,284 - GFF1711 0.29 -0.0
Or see this region's nucleotide sequence