Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF168 and GFF169 overlap by 4 nucleotides GFF169 and GFF170 overlap by 11 nucleotides GFF170 and GFF171 are separated by 73 nucleotides GFF171 and GFF172 are separated by 74 nucleotides
GFF168 - MCP methyltransferase, CheR-type, at 199,194 to 200,060
GFF168
GFF169 - Protein-glutamate methylesterase (EC 3.1.1.61), at 200,057 to 200,659
GFF169
GFF170 - Two-component system sensor histidine kinase/response regulator hybrid, at 200,649 to 201,872
GFF170
GFF171 - Histidine kinase, at 201,946 to 202,305
GFF171
GFF172 - hypothetical protein, at 202,380 to 204,242
GFF172
Position (kb) 200
201
202 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 199.710 kb on + strand, within GFF168 at 199.710 kb on + strand, within GFF168 at 199.710 kb on + strand, within GFF168 at 199.722 kb on + strand, within GFF168 at 199.723 kb on - strand, within GFF168 at 199.758 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.761 kb on + strand, within GFF168 at 199.762 kb on - strand, within GFF168 at 199.762 kb on - strand, within GFF168 at 199.773 kb on + strand, within GFF168 at 199.774 kb on - strand, within GFF168 at 199.893 kb on + strand, within GFF168 at 199.894 kb on - strand, within GFF168 at 200.043 kb on + strand at 200.044 kb on - strand at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.175 kb on + strand, within GFF169 at 200.176 kb on - strand, within GFF169 at 200.176 kb on - strand, within GFF169 at 200.176 kb on - strand, within GFF169 at 200.303 kb on + strand, within GFF169 at 200.303 kb on + strand, within GFF169 at 200.303 kb on + strand, within GFF169 at 200.303 kb on + strand, within GFF169 at 200.304 kb on - strand, within GFF169 at 200.304 kb on - strand, within GFF169 at 200.304 kb on - strand, within GFF169 at 200.321 kb on + strand, within GFF169 at 200.322 kb on - strand, within GFF169 at 200.322 kb on - strand, within GFF169 at 200.322 kb on - strand, within GFF169 at 200.334 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.471 kb on + strand, within GFF169 at 200.472 kb on - strand, within GFF169 at 200.472 kb on - strand, within GFF169 at 200.472 kb on - strand, within GFF169 at 200.526 kb on + strand, within GFF169 at 200.526 kb on + strand, within GFF169 at 200.526 kb on + strand, within GFF169 at 200.527 kb on - strand, within GFF169 at 200.594 kb on + strand, within GFF169 at 200.594 kb on + strand, within GFF169 at 200.594 kb on + strand, within GFF169 at 200.594 kb on + strand, within GFF169 at 200.595 kb on - strand, within GFF169 at 200.595 kb on - strand, within GFF169 at 200.595 kb on - strand, within GFF169 at 200.595 kb on - strand, within GFF169 at 200.931 kb on + strand, within GFF170 at 200.931 kb on + strand, within GFF170 at 200.932 kb on - strand, within GFF170 at 200.932 kb on - strand, within GFF170 at 200.932 kb on - strand, within GFF170 at 200.946 kb on + strand, within GFF170 at 200.947 kb on - strand, within GFF170 at 201.149 kb on + strand, within GFF170 at 201.149 kb on + strand, within GFF170 at 201.149 kb on + strand, within GFF170 at 201.149 kb on + strand, within GFF170 at 201.150 kb on - strand, within GFF170 at 201.210 kb on + strand, within GFF170 at 201.211 kb on - strand, within GFF170 at 201.211 kb on - strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.735 kb on + strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.736 kb on - strand, within GFF170 at 201.773 kb on + strand at 201.773 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.870 kb on + strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.871 kb on - strand at 201.882 kb on + strand at 201.882 kb on + strand at 201.883 kb on - strand at 201.927 kb on - strand at 201.927 kb on - strand at 202.032 kb on + strand, within GFF171 at 202.032 kb on + strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.033 kb on - strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.036 kb on + strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.037 kb on - strand, within GFF171 at 202.384 kb on + strand at 202.384 kb on + strand at 202.385 kb on - strand at 202.420 kb on + strand at 202.420 kb on + strand at 202.420 kb on + strand at 202.420 kb on + strand at 202.420 kb on + strand at 202.421 kb on - strand at 202.421 kb on - strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.450 kb on + strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.451 kb on - strand at 202.501 kb on + strand at 202.501 kb on + strand at 202.501 kb on + strand at 202.501 kb on + strand at 202.502 kb on - strand at 202.502 kb on - strand at 202.502 kb on - strand at 202.502 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 199,710 + GFF168 0.60 -2.1 199,710 + GFF168 0.60 +0.0 199,710 + GFF168 0.60 -1.6 199,722 + GFF168 0.61 -0.2 199,723 - GFF168 0.61 -0.9 199,758 + GFF168 0.65 -1.0 199,761 + GFF168 0.65 -0.4 199,761 + GFF168 0.65 -0.1 199,761 + GFF168 0.65 -0.6 199,761 + GFF168 0.65 -0.9 199,761 + GFF168 0.65 -0.4 199,761 + GFF168 0.65 -2.5 199,761 + GFF168 0.65 -0.4 199,761 + GFF168 0.65 -1.2 199,762 - GFF168 0.66 -0.4 199,762 - GFF168 0.66 +0.6 199,773 + GFF168 0.67 -1.2 199,774 - GFF168 0.67 -2.4 199,893 + GFF168 0.81 +0.2 199,894 - GFF168 0.81 +0.0 200,043 + +0.3 200,044 - -2.8 200,175 + GFF169 0.20 -0.6 200,175 + GFF169 0.20 -0.1 200,175 + GFF169 0.20 -0.1 200,175 + GFF169 0.20 -1.1 200,175 + GFF169 0.20 +0.5 200,175 + GFF169 0.20 -1.0 200,176 - GFF169 0.20 +0.9 200,176 - GFF169 0.20 -0.7 200,176 - GFF169 0.20 -1.2 200,303 + GFF169 0.41 -2.0 200,303 + GFF169 0.41 -1.2 200,303 + GFF169 0.41 -1.0 200,303 + GFF169 0.41 -1.3 200,304 - GFF169 0.41 +1.0 200,304 - GFF169 0.41 -0.3 200,304 - GFF169 0.41 -1.8 200,321 + GFF169 0.44 +0.7 200,322 - GFF169 0.44 +0.0 200,322 - GFF169 0.44 -0.3 200,322 - GFF169 0.44 +0.4 200,334 + GFF169 0.46 -0.9 200,471 + GFF169 0.69 +0.6 200,471 + GFF169 0.69 -1.0 200,471 + GFF169 0.69 -0.6 200,471 + GFF169 0.69 -1.4 200,471 + GFF169 0.69 -1.5 200,471 + GFF169 0.69 +0.4 200,471 + GFF169 0.69 -0.4 200,471 + GFF169 0.69 -1.5 200,472 - GFF169 0.69 -0.7 200,472 - GFF169 0.69 +0.5 200,472 - GFF169 0.69 +1.0 200,526 + GFF169 0.78 -0.2 200,526 + GFF169 0.78 +0.3 200,526 + GFF169 0.78 -1.4 200,527 - GFF169 0.78 -0.4 200,594 + GFF169 0.89 -0.5 200,594 + GFF169 0.89 -0.6 200,594 + GFF169 0.89 -0.4 200,594 + GFF169 0.89 -1.9 200,595 - GFF169 0.89 -0.7 200,595 - GFF169 0.89 -0.2 200,595 - GFF169 0.89 -0.6 200,595 - GFF169 0.89 -0.8 200,931 + GFF170 0.23 -0.9 200,931 + GFF170 0.23 -0.4 200,932 - GFF170 0.23 +0.3 200,932 - GFF170 0.23 -0.3 200,932 - GFF170 0.23 -1.0 200,946 + GFF170 0.24 +0.3 200,947 - GFF170 0.24 +0.6 201,149 + GFF170 0.41 -1.0 201,149 + GFF170 0.41 +0.3 201,149 + GFF170 0.41 +0.4 201,149 + GFF170 0.41 -0.4 201,150 - GFF170 0.41 -0.6 201,210 + GFF170 0.46 +1.0 201,211 - GFF170 0.46 -0.3 201,211 - GFF170 0.46 -0.5 201,735 + GFF170 0.89 -0.1 201,735 + GFF170 0.89 +0.3 201,735 + GFF170 0.89 +0.4 201,735 + GFF170 0.89 -0.1 201,735 + GFF170 0.89 -0.9 201,735 + GFF170 0.89 -0.7 201,735 + GFF170 0.89 +0.0 201,735 + GFF170 0.89 +0.0 201,735 + GFF170 0.89 +0.6 201,735 + GFF170 0.89 -1.6 201,735 + GFF170 0.89 +0.5 201,735 + GFF170 0.89 -1.4 201,735 + GFF170 0.89 +0.0 201,735 + GFF170 0.89 -1.6 201,736 - GFF170 0.89 -0.7 201,736 - GFF170 0.89 -0.6 201,736 - GFF170 0.89 +0.1 201,736 - GFF170 0.89 -0.3 201,736 - GFF170 0.89 +0.0 201,736 - GFF170 0.89 +0.3 201,736 - GFF170 0.89 -0.2 201,736 - GFF170 0.89 -0.5 201,736 - GFF170 0.89 +0.3 201,736 - GFF170 0.89 -0.3 201,773 + +0.6 201,773 + -0.1 201,870 + -2.4 201,870 + +0.9 201,870 + -1.5 201,870 + +0.1 201,870 + +0.2 201,870 + -0.9 201,870 + +0.2 201,870 + +0.0 201,870 + -0.9 201,870 + -0.3 201,870 + +0.4 201,870 + -0.5 201,870 + -0.7 201,870 + -0.2 201,871 - -0.1 201,871 - -1.4 201,871 - -1.6 201,871 - -2.2 201,871 - +0.2 201,871 - +0.0 201,871 - -0.5 201,871 - +0.4 201,871 - -0.5 201,871 - -0.4 201,882 + -0.1 201,882 + +2.6 201,883 - +0.0 201,927 - +0.0 201,927 - +0.3 202,032 + GFF171 0.24 +0.2 202,032 + GFF171 0.24 -0.2 202,033 - GFF171 0.24 -1.6 202,033 - GFF171 0.24 +0.4 202,033 - GFF171 0.24 +0.6 202,033 - GFF171 0.24 +1.2 202,033 - GFF171 0.24 -0.6 202,033 - GFF171 0.24 -1.6 202,036 + GFF171 0.25 +0.8 202,036 + GFF171 0.25 +0.1 202,036 + GFF171 0.25 -0.8 202,036 + GFF171 0.25 +0.4 202,036 + GFF171 0.25 -0.5 202,036 + GFF171 0.25 +0.1 202,036 + GFF171 0.25 +0.3 202,036 + GFF171 0.25 -1.6 202,036 + GFF171 0.25 -0.6 202,036 + GFF171 0.25 +0.4 202,037 - GFF171 0.25 +0.2 202,037 - GFF171 0.25 +0.1 202,037 - GFF171 0.25 +0.2 202,037 - GFF171 0.25 +0.3 202,037 - GFF171 0.25 +0.7 202,384 + -0.3 202,384 + -0.9 202,385 - -1.6 202,420 + -0.7 202,420 + -0.2 202,420 + +0.4 202,420 + -0.9 202,420 + +0.7 202,421 - -0.4 202,421 - -0.6 202,450 + +1.0 202,450 + -2.2 202,450 + -1.5 202,450 + -0.1 202,450 + -1.7 202,450 + +1.6 202,450 + -0.7 202,450 + -0.6 202,450 + +0.3 202,450 + -0.1 202,450 + -0.2 202,450 + +0.0 202,450 + -0.0 202,450 + -0.7 202,450 + -0.2 202,450 + +0.2 202,450 + -0.8 202,451 - -0.2 202,451 - -0.2 202,451 - -0.9 202,451 - +1.1 202,451 - +0.0 202,451 - +0.2 202,451 - -0.6 202,451 - -0.4 202,451 - -0.2 202,451 - +1.1 202,451 - +0.3 202,451 - -0.6 202,451 - -1.2 202,451 - -0.1 202,451 - +0.9 202,501 + +0.3 202,501 + +0.8 202,501 + -0.7 202,501 + +0.4 202,502 - +0.4 202,502 - -0.0 202,502 - -0.4 202,502 - +2.2
Or see this region's nucleotide sequence