Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1689 and GFF1690 are separated by 21 nucleotides GFF1690 and GFF1691 are separated by 101 nucleotides GFF1691 and GFF1692 are separated by 7 nucleotides
GFF1689 - BUG/TctC family periplasmic protein, at 334,280 to 335,272
GFF1689
GFF1690 - KEGG: DNA-binding protein H-NS, at 335,294 to 335,647
GFF1690
GFF1691 - Two component, Sigma-54 Specific, central transcriptional regulator of acidic amino acid uptake, at 335,749 to 337,110
GFF1691
GFF1692 - Two-component system sensor histidine kinase, at 337,118 to 339,070
GFF1692
Position (kb) 335
336
337
338 Strain fitness (log2 ratio) -2
-1
0
1 at 334.828 kb on - strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.847 kb on + strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 334.848 kb on - strand, within GFF1689 at 335.271 kb on - strand at 335.271 kb on - strand at 335.295 kb on + strand at 335.296 kb on - strand at 335.523 kb on + strand, within GFF1690 at 335.533 kb on + strand, within GFF1690 at 335.534 kb on - strand, within GFF1690 at 335.631 kb on + strand at 335.631 kb on + strand at 335.671 kb on - strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.686 kb on + strand at 335.687 kb on - strand at 335.687 kb on - strand at 335.687 kb on - strand at 335.687 kb on - strand at 335.687 kb on - strand at 335.687 kb on - strand at 335.687 kb on - strand at 335.750 kb on + strand at 336.035 kb on + strand, within GFF1691 at 336.035 kb on + strand, within GFF1691 at 336.035 kb on + strand, within GFF1691 at 336.035 kb on + strand, within GFF1691 at 336.035 kb on + strand, within GFF1691 at 336.036 kb on - strand, within GFF1691 at 336.036 kb on - strand, within GFF1691 at 336.036 kb on - strand, within GFF1691 at 336.036 kb on - strand, within GFF1691 at 336.090 kb on - strand, within GFF1691 at 336.191 kb on + strand, within GFF1691 at 336.192 kb on - strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.194 kb on + strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 336.195 kb on - strand, within GFF1691 at 337.155 kb on + strand at 337.155 kb on + strand at 337.155 kb on + strand at 337.155 kb on + strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.156 kb on - strand at 337.274 kb on + strand at 337.577 kb on + strand, within GFF1692
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 334,828 - GFF1689 0.55 +0.2 334,847 + GFF1689 0.57 +0.1 334,847 + GFF1689 0.57 -2.3 334,847 + GFF1689 0.57 -0.1 334,848 - GFF1689 0.57 +0.4 334,848 - GFF1689 0.57 +0.6 334,848 - GFF1689 0.57 -0.2 334,848 - GFF1689 0.57 +0.8 334,848 - GFF1689 0.57 +0.6 334,848 - GFF1689 0.57 -0.5 335,271 - -0.4 335,271 - -0.3 335,295 + -1.7 335,296 - +0.1 335,523 + GFF1690 0.65 +0.1 335,533 + GFF1690 0.68 -0.2 335,534 - GFF1690 0.68 +1.6 335,631 + -0.5 335,631 + -0.8 335,671 - +0.5 335,686 + -0.2 335,686 + +0.2 335,686 + +0.2 335,686 + -0.7 335,686 + -0.0 335,686 + -0.6 335,686 + -0.2 335,686 + +1.1 335,686 + +1.2 335,686 + +1.3 335,686 + -1.0 335,687 - +0.8 335,687 - -1.3 335,687 - -1.3 335,687 - +0.7 335,687 - +0.2 335,687 - +0.2 335,687 - +0.5 335,750 + -1.6 336,035 + GFF1691 0.21 +0.2 336,035 + GFF1691 0.21 -0.5 336,035 + GFF1691 0.21 -0.1 336,035 + GFF1691 0.21 -0.3 336,035 + GFF1691 0.21 -0.1 336,036 - GFF1691 0.21 -0.6 336,036 - GFF1691 0.21 -1.0 336,036 - GFF1691 0.21 +1.1 336,036 - GFF1691 0.21 +0.4 336,090 - GFF1691 0.25 +1.4 336,191 + GFF1691 0.32 -0.2 336,192 - GFF1691 0.33 -0.1 336,194 + GFF1691 0.33 -1.1 336,194 + GFF1691 0.33 -0.3 336,194 + GFF1691 0.33 +0.4 336,194 + GFF1691 0.33 +1.6 336,194 + GFF1691 0.33 -0.6 336,195 - GFF1691 0.33 -1.9 336,195 - GFF1691 0.33 -0.6 336,195 - GFF1691 0.33 +0.7 336,195 - GFF1691 0.33 +0.2 336,195 - GFF1691 0.33 +0.4 337,155 + -0.5 337,155 + +0.0 337,155 + +0.1 337,155 + -1.3 337,156 - +1.0 337,156 - -0.9 337,156 - -0.5 337,156 - +0.8 337,274 + -0.8 337,577 + GFF1692 0.24 -0.2
Or see this region's nucleotide sequence