Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1614 and GFF1615 overlap by 4 nucleotides GFF1615 and GFF1616 are separated by 128 nucleotides GFF1616 and GFF1617 are separated by 15 nucleotides GFF1617 and GFF1618 are separated by 99 nucleotides
GFF1614 - Phosphonate ABC transporter ATP-binding protein PhnC (TC 3.A.1.9.1), at 211,983 to 212,783
GFF1614
GFF1615 - Phosphonate ABC transporter substrate-binding protein PhnD (TC 3.A.1.9.1), at 212,780 to 213,649
GFF1615
GFF1616 - Phosphonate uptake and metabolism regulator, LysR-family, at 213,778 to 214,665
GFF1616
GFF1617 - Phosphonate uptake and metabolism regulator, LysR-family, at 214,681 to 215,553
GFF1617
GFF1618 - Phospholipase C (EC 3.1.4.3), at 215,653 to 217,803
GFF1618
Position (kb) 213
214
215 Strain fitness (log2 ratio) -2
-1
0
1
2 at 212.838 kb on + strand at 212.839 kb on - strand at 212.839 kb on - strand at 213.300 kb on + strand, within GFF1615 at 213.375 kb on + strand, within GFF1615 at 213.376 kb on - strand, within GFF1615 at 213.376 kb on - strand, within GFF1615 at 213.376 kb on - strand, within GFF1615 at 213.376 kb on - strand, within GFF1615 at 213.376 kb on - strand, within GFF1615 at 213.441 kb on + strand, within GFF1615 at 213.716 kb on + strand at 213.716 kb on + strand at 213.717 kb on - strand at 213.717 kb on - strand at 213.729 kb on + strand at 213.773 kb on + strand at 213.773 kb on + strand at 213.773 kb on + strand at 213.773 kb on + strand at 213.774 kb on - strand at 213.774 kb on - strand at 214.012 kb on + strand, within GFF1616 at 214.012 kb on + strand, within GFF1616 at 214.012 kb on + strand, within GFF1616 at 214.012 kb on + strand, within GFF1616 at 214.013 kb on - strand, within GFF1616 at 214.013 kb on - strand, within GFF1616 at 214.183 kb on + strand, within GFF1616 at 214.246 kb on + strand, within GFF1616 at 214.564 kb on + strand, within GFF1616 at 214.565 kb on - strand, within GFF1616 at 214.565 kb on - strand, within GFF1616 at 214.571 kb on - strand, within GFF1616 at 214.647 kb on - strand at 214.829 kb on + strand, within GFF1617 at 214.829 kb on + strand, within GFF1617 at 214.829 kb on + strand, within GFF1617 at 215.084 kb on + strand, within GFF1617 at 215.084 kb on + strand, within GFF1617 at 215.085 kb on - strand, within GFF1617 at 215.147 kb on + strand, within GFF1617 at 215.148 kb on - strand, within GFF1617 at 215.225 kb on + strand, within GFF1617 at 215.409 kb on - strand, within GFF1617 at 215.446 kb on + strand, within GFF1617 at 215.446 kb on + strand, within GFF1617 at 215.446 kb on + strand, within GFF1617 at 215.447 kb on - strand, within GFF1617 at 215.447 kb on - strand, within GFF1617 at 215.447 kb on - strand, within GFF1617 at 215.536 kb on + strand at 215.537 kb on - strand at 215.537 kb on - strand at 215.629 kb on + strand at 215.629 kb on + strand at 215.629 kb on + strand at 215.630 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 212,838 + -0.5 212,839 - +0.6 212,839 - +0.8 213,300 + GFF1615 0.60 +1.1 213,375 + GFF1615 0.68 -0.9 213,376 - GFF1615 0.69 -0.7 213,376 - GFF1615 0.69 -0.8 213,376 - GFF1615 0.69 +0.0 213,376 - GFF1615 0.69 +0.8 213,376 - GFF1615 0.69 -1.1 213,441 + GFF1615 0.76 -1.8 213,716 + +1.4 213,716 + -0.5 213,717 - -2.3 213,717 - -0.4 213,729 + -0.9 213,773 + -1.0 213,773 + +0.7 213,773 + +0.2 213,773 + +0.1 213,774 - +0.5 213,774 - +0.4 214,012 + GFF1616 0.26 +0.2 214,012 + GFF1616 0.26 -0.5 214,012 + GFF1616 0.26 -0.2 214,012 + GFF1616 0.26 -0.3 214,013 - GFF1616 0.26 +0.9 214,013 - GFF1616 0.26 -0.4 214,183 + GFF1616 0.46 +0.1 214,246 + GFF1616 0.53 +0.3 214,564 + GFF1616 0.89 +0.2 214,565 - GFF1616 0.89 +0.6 214,565 - GFF1616 0.89 -2.0 214,571 - GFF1616 0.89 +1.1 214,647 - +1.8 214,829 + GFF1617 0.17 -0.5 214,829 + GFF1617 0.17 +0.2 214,829 + GFF1617 0.17 +0.9 215,084 + GFF1617 0.46 -2.1 215,084 + GFF1617 0.46 +0.1 215,085 - GFF1617 0.46 -0.2 215,147 + GFF1617 0.53 -0.6 215,148 - GFF1617 0.53 -1.4 215,225 + GFF1617 0.62 -0.6 215,409 - GFF1617 0.83 -0.0 215,446 + GFF1617 0.88 -1.0 215,446 + GFF1617 0.88 -1.0 215,446 + GFF1617 0.88 -0.3 215,447 - GFF1617 0.88 -0.2 215,447 - GFF1617 0.88 +0.0 215,447 - GFF1617 0.88 -1.8 215,536 + -0.9 215,537 - +0.1 215,537 - -2.3 215,629 + +1.8 215,629 + -0.3 215,629 + -1.1 215,630 - +0.8
Or see this region's nucleotide sequence