Strain Fitness in Variovorax sp. SCN45 around GFF1610

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF1608 and GFF1609 are separated by 21 nucleotidesGFF1609 and GFF1610 are separated by 13 nucleotidesGFF1610 and GFF1611 are separated by 5 nucleotidesGFF1611 and GFF1612 are separated by 6 nucleotidesGFF1612 and GFF1613 are separated by 43 nucleotides GFF1608 - Aminotransferase, class III, at 206,868 to 208,232 GFF1608 GFF1609 - 2-haloalkanoic acid dehalogenase (EC 3.8.1.2), at 208,254 to 208,979 GFF1609 GFF1610 - Succinate-semialdehyde dehydrogenase [NAD(P)+] (EC 1.2.1.16), at 208,993 to 210,459 GFF1610 GFF1611 - no description, at 210,465 to 210,812 GFF1611 GFF1612 - no description, at 210,819 to 211,112 GFF1612 GFF1613 - Phosphonate ABC transporter permease protein PhnE (TC 3.A.1.9.1), at 211,156 to 211,980 GFF1613 Position (kb) 208 209 210 211Strain fitness (log2 ratio) -2 -1 0 1 2 3at 208.165 kb on - strandat 208.165 kb on - strandat 208.294 kb on - strandat 208.326 kb on + strandat 208.327 kb on - strand, within GFF1609at 208.327 kb on - strand, within GFF1609at 208.395 kb on + strand, within GFF1609at 208.395 kb on + strand, within GFF1609at 208.395 kb on + strand, within GFF1609at 208.395 kb on + strand, within GFF1609at 208.396 kb on - strand, within GFF1609at 208.396 kb on - strand, within GFF1609at 208.396 kb on - strand, within GFF1609at 208.396 kb on - strand, within GFF1609at 208.396 kb on - strand, within GFF1609at 208.468 kb on - strand, within GFF1609at 208.581 kb on + strand, within GFF1609at 208.581 kb on + strand, within GFF1609at 208.596 kb on + strand, within GFF1609at 208.596 kb on + strand, within GFF1609at 208.597 kb on - strand, within GFF1609at 208.597 kb on - strand, within GFF1609at 208.597 kb on - strand, within GFF1609at 208.681 kb on - strand, within GFF1609at 208.704 kb on + strand, within GFF1609at 208.704 kb on + strand, within GFF1609at 208.705 kb on - strand, within GFF1609at 208.732 kb on - strand, within GFF1609at 209.038 kb on + strandat 209.038 kb on + strandat 209.039 kb on - strandat 209.039 kb on - strandat 209.558 kb on - strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.884 kb on + strand, within GFF1610at 209.885 kb on - strand, within GFF1610at 209.885 kb on - strand, within GFF1610at 209.885 kb on - strand, within GFF1610at 209.903 kb on - strand, within GFF1610at 209.903 kb on - strand, within GFF1610at 209.903 kb on - strand, within GFF1610at 209.903 kb on - strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.247 kb on + strand, within GFF1610at 210.248 kb on - strand, within GFF1610at 210.458 kb on - strandat 210.487 kb on + strandat 210.488 kb on - strandat 210.494 kb on - strandat 210.494 kb on - strandat 210.533 kb on + strand, within GFF1611at 210.533 kb on + strand, within GFF1611at 210.533 kb on + strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.534 kb on - strand, within GFF1611at 210.542 kb on + strand, within GFF1611at 210.548 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.747 kb on + strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.748 kb on - strand, within GFF1611at 210.926 kb on + strand, within GFF1612at 210.926 kb on + strand, within GFF1612at 210.927 kb on - strand, within GFF1612at 210.927 kb on - strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.943 kb on + strand, within GFF1612at 210.944 kb on - strand, within GFF1612at 210.944 kb on - strand, within GFF1612at 211.023 kb on + strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.024 kb on - strand, within GFF1612at 211.033 kb on + strand, within GFF1612at 211.033 kb on + strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.034 kb on - strand, within GFF1612at 211.035 kb on + strand, within GFF1612at 211.035 kb on + strand, within GFF1612at 211.036 kb on - strand, within GFF1612at 211.041 kb on + strand, within GFF1612at 211.041 kb on + strand, within GFF1612at 211.042 kb on - strand, within GFF1612at 211.042 kb on - strand, within GFF1612at 211.231 kb on - strandat 211.236 kb on + strandat 211.237 kb on - strandat 211.361 kb on + strand, within GFF1613

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
208,165 - -0.1
208,165 - -0.4
208,294 - +0.2
208,326 + +0.6
208,327 - GFF1609 0.10 +0.1
208,327 - GFF1609 0.10 -0.5
208,395 + GFF1609 0.19 -1.9
208,395 + GFF1609 0.19 +0.8
208,395 + GFF1609 0.19 -0.1
208,395 + GFF1609 0.19 -0.7
208,396 - GFF1609 0.20 -0.3
208,396 - GFF1609 0.20 -0.4
208,396 - GFF1609 0.20 -0.2
208,396 - GFF1609 0.20 +0.2
208,396 - GFF1609 0.20 +0.6
208,468 - GFF1609 0.29 -1.0
208,581 + GFF1609 0.45 -0.4
208,581 + GFF1609 0.45 -0.2
208,596 + GFF1609 0.47 -0.4
208,596 + GFF1609 0.47 +0.4
208,597 - GFF1609 0.47 -0.6
208,597 - GFF1609 0.47 +0.2
208,597 - GFF1609 0.47 -0.8
208,681 - GFF1609 0.59 -0.4
208,704 + GFF1609 0.62 -0.2
208,704 + GFF1609 0.62 -1.1
208,705 - GFF1609 0.62 -0.5
208,732 - GFF1609 0.66 -0.0
209,038 + -0.6
209,038 + +0.6
209,039 - -0.5
209,039 - +0.2
209,558 - GFF1610 0.39 +0.3
209,884 + GFF1610 0.61 -1.8
209,884 + GFF1610 0.61 -0.2
209,884 + GFF1610 0.61 +0.2
209,884 + GFF1610 0.61 -0.2
209,884 + GFF1610 0.61 -0.6
209,884 + GFF1610 0.61 +1.0
209,884 + GFF1610 0.61 +0.6
209,884 + GFF1610 0.61 +0.2
209,885 - GFF1610 0.61 +0.7
209,885 - GFF1610 0.61 +0.2
209,885 - GFF1610 0.61 -0.9
209,903 - GFF1610 0.62 -1.2
209,903 - GFF1610 0.62 -0.6
209,903 - GFF1610 0.62 +0.5
209,903 - GFF1610 0.62 -2.2
210,247 + GFF1610 0.85 -0.4
210,247 + GFF1610 0.85 +1.1
210,247 + GFF1610 0.85 +1.0
210,247 + GFF1610 0.85 +0.4
210,247 + GFF1610 0.85 -0.3
210,247 + GFF1610 0.85 +0.6
210,248 - GFF1610 0.86 +0.4
210,458 - -0.9
210,487 + -0.4
210,488 - -0.3
210,494 - +0.2
210,494 - -0.1
210,533 + GFF1611 0.20 -0.5
210,533 + GFF1611 0.20 +0.2
210,533 + GFF1611 0.20 -0.9
210,534 - GFF1611 0.20 -0.3
210,534 - GFF1611 0.20 -0.6
210,534 - GFF1611 0.20 -0.2
210,542 + GFF1611 0.22 -0.3
210,548 + GFF1611 0.24 +0.8
210,747 + GFF1611 0.81 +0.4
210,747 + GFF1611 0.81 +1.4
210,747 + GFF1611 0.81 -1.5
210,747 + GFF1611 0.81 -1.6
210,747 + GFF1611 0.81 -0.6
210,747 + GFF1611 0.81 -2.2
210,748 - GFF1611 0.81 -0.2
210,748 - GFF1611 0.81 +0.1
210,748 - GFF1611 0.81 -0.4
210,748 - GFF1611 0.81 +0.1
210,748 - GFF1611 0.81 -1.2
210,748 - GFF1611 0.81 -1.8
210,926 + GFF1612 0.36 -0.8
210,926 + GFF1612 0.36 +0.8
210,927 - GFF1612 0.37 -0.3
210,927 - GFF1612 0.37 -0.1
210,943 + GFF1612 0.42 -0.3
210,943 + GFF1612 0.42 +0.2
210,943 + GFF1612 0.42 +0.5
210,944 - GFF1612 0.43 +0.0
210,944 - GFF1612 0.43 +0.4
211,023 + GFF1612 0.69 +1.8
211,024 - GFF1612 0.70 +0.0
211,024 - GFF1612 0.70 +0.3
211,024 - GFF1612 0.70 +0.1
211,024 - GFF1612 0.70 +0.7
211,024 - GFF1612 0.70 +0.3
211,033 + GFF1612 0.73 +0.1
211,033 + GFF1612 0.73 +1.1
211,034 - GFF1612 0.73 +0.4
211,034 - GFF1612 0.73 -0.5
211,034 - GFF1612 0.73 +0.3
211,034 - GFF1612 0.73 -0.0
211,034 - GFF1612 0.73 +0.1
211,035 + GFF1612 0.73 -0.8
211,035 + GFF1612 0.73 -1.0
211,036 - GFF1612 0.74 +0.1
211,041 + GFF1612 0.76 +0.0
211,041 + GFF1612 0.76 +0.3
211,042 - GFF1612 0.76 -0.4
211,042 - GFF1612 0.76 +2.8
211,231 - -0.3
211,236 + -0.4
211,237 - +0.7
211,361 + GFF1613 0.25 -0.5

Or see this region's nucleotide sequence