Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1597 and GFF1598 are separated by 171 nucleotides GFF1598 and GFF1599 overlap by 4 nucleotides GFF1599 and GFF1600 overlap by 4 nucleotides GFF1600 and GFF1601 are separated by 19 nucleotides
GFF1597 - Acetolactate synthase large subunit (EC 2.2.1.6), at 194,770 to 196,578
GFF1597
GFF1598 - no description, at 196,750 to 197,148
GFF1598
GFF1599 - Branched-chain amino acid transport system permease protein LivM (TC 3.A.1.4.1), at 197,145 to 198,116
GFF1599
GFF1600 - Branched-chain amino acid ABC transporter, permease protein LivH (TC 3.A.1.4.1), at 198,113 to 199,000
GFF1600
GFF1601 - no description, at 199,020 to 200,219
GFF1601
Position (kb) 197
198
199 Strain fitness (log2 ratio) -3
-2
-1
0
1 at 196.223 kb on + strand, within GFF1597 at 196.224 kb on - strand, within GFF1597 at 196.391 kb on + strand, within GFF1597 at 196.391 kb on + strand, within GFF1597 at 196.391 kb on + strand, within GFF1597 at 196.392 kb on - strand, within GFF1597 at 196.403 kb on - strand at 196.403 kb on - strand at 196.583 kb on + strand at 196.584 kb on - strand at 196.584 kb on - strand at 196.584 kb on - strand at 196.605 kb on + strand at 196.609 kb on + strand at 196.733 kb on + strand at 196.733 kb on + strand at 196.751 kb on + strand at 196.752 kb on - strand at 196.752 kb on - strand at 196.752 kb on - strand at 196.752 kb on - strand at 196.826 kb on - strand, within GFF1598 at 197.012 kb on + strand, within GFF1598 at 197.012 kb on + strand, within GFF1598 at 197.013 kb on - strand, within GFF1598 at 197.431 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.461 kb on + strand, within GFF1599 at 197.462 kb on - strand, within GFF1599 at 197.462 kb on - strand, within GFF1599 at 197.500 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.518 kb on + strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.519 kb on - strand, within GFF1599 at 197.717 kb on - strand, within GFF1599 at 197.860 kb on + strand, within GFF1599 at 197.887 kb on + strand, within GFF1599 at 197.983 kb on + strand, within GFF1599 at 197.984 kb on - strand, within GFF1599 at 197.984 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 197.999 kb on - strand, within GFF1599 at 198.073 kb on + strand at 198.073 kb on + strand at 198.074 kb on - strand at 198.074 kb on - strand at 198.074 kb on - strand at 198.106 kb on + strand at 198.106 kb on + strand at 198.107 kb on - strand at 198.107 kb on - strand at 198.107 kb on - strand at 198.204 kb on + strand, within GFF1600 at 198.715 kb on + strand, within GFF1600 at 198.715 kb on + strand, within GFF1600 at 199.066 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 196,223 + GFF1597 0.80 +0.0 196,224 - GFF1597 0.80 -1.3 196,391 + GFF1597 0.90 -0.4 196,391 + GFF1597 0.90 +0.1 196,391 + GFF1597 0.90 -0.2 196,392 - GFF1597 0.90 +0.5 196,403 - +0.1 196,403 - -1.0 196,583 + -0.4 196,584 - -0.7 196,584 - +0.2 196,584 - -2.1 196,605 + +0.1 196,609 + +1.7 196,733 + +0.2 196,733 + -0.2 196,751 + -0.0 196,752 - +0.4 196,752 - -0.2 196,752 - -0.8 196,752 - +0.7 196,826 - GFF1598 0.19 -2.3 197,012 + GFF1598 0.66 -0.1 197,012 + GFF1598 0.66 +0.8 197,013 - GFF1598 0.66 +0.5 197,431 + GFF1599 0.29 -1.2 197,461 + GFF1599 0.33 -0.2 197,461 + GFF1599 0.33 -3.0 197,461 + GFF1599 0.33 -0.5 197,462 - GFF1599 0.33 -1.3 197,462 - GFF1599 0.33 -0.6 197,500 + GFF1599 0.37 -1.1 197,518 + GFF1599 0.38 -0.3 197,518 + GFF1599 0.38 -1.3 197,518 + GFF1599 0.38 +0.0 197,518 + GFF1599 0.38 -0.5 197,519 - GFF1599 0.38 +1.4 197,519 - GFF1599 0.38 -0.2 197,519 - GFF1599 0.38 -0.4 197,519 - GFF1599 0.38 -0.1 197,519 - GFF1599 0.38 +0.5 197,519 - GFF1599 0.38 -1.0 197,519 - GFF1599 0.38 -0.2 197,717 - GFF1599 0.59 -1.6 197,860 + GFF1599 0.74 -0.2 197,887 + GFF1599 0.76 -0.1 197,983 + GFF1599 0.86 -0.8 197,984 - GFF1599 0.86 -0.3 197,984 - GFF1599 0.86 -1.2 197,999 - GFF1599 0.88 -0.3 197,999 - GFF1599 0.88 +0.3 197,999 - GFF1599 0.88 +0.5 197,999 - GFF1599 0.88 +0.8 197,999 - GFF1599 0.88 +0.6 198,073 + -0.4 198,073 + -1.5 198,074 - +0.1 198,074 - -0.8 198,074 - -0.4 198,106 + -0.6 198,106 + -0.6 198,107 - -1.7 198,107 - +0.4 198,107 - +0.5 198,204 + GFF1600 0.10 +0.0 198,715 + GFF1600 0.68 -1.2 198,715 + GFF1600 0.68 -0.3 199,066 + +0.2
Or see this region's nucleotide sequence