Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1573 and GFF1574 are separated by 201 nucleotides GFF1574 and GFF1575 overlap by 4 nucleotides GFF1575 and GFF1576 are separated by 19 nucleotides
GFF1573 - Oxidoreductase, short-chain dehydrogenase/reductase family, at 173,540 to 174,274
GFF1573
GFF1574 - Alpha-aminoadipate aminotransferase (EC 2.6.1.39) @ Leucine transaminase (EC 2.6.1.6) @ Valine transaminase, at 174,476 to 175,687
GFF1574
GFF1575 - BUG/TctC family periplasmic protein, at 175,684 to 176,655
GFF1575
GFF1576 - 2-pyrone-4,6-dicarboxylic acid hydrolase (EC 3.1.1.57), at 176,675 to 177,592
GFF1576
Position (kb) 174
175
176 Strain fitness (log2 ratio) -1
0
1 at 174.018 kb on - strand, within GFF1573 at 174.018 kb on - strand, within GFF1573 at 174.681 kb on - strand, within GFF1574 at 174.860 kb on + strand, within GFF1574 at 174.861 kb on - strand, within GFF1574 at 174.890 kb on + strand, within GFF1574 at 174.902 kb on + strand, within GFF1574 at 174.978 kb on - strand, within GFF1574 at 174.978 kb on - strand, within GFF1574 at 174.978 kb on - strand, within GFF1574 at 175.208 kb on + strand, within GFF1574 at 175.208 kb on + strand, within GFF1574 at 175.208 kb on + strand, within GFF1574 at 175.208 kb on + strand, within GFF1574 at 175.208 kb on + strand, within GFF1574 at 175.209 kb on - strand, within GFF1574 at 175.209 kb on - strand, within GFF1574 at 175.209 kb on - strand, within GFF1574 at 175.209 kb on - strand, within GFF1574 at 175.283 kb on + strand, within GFF1574 at 176.149 kb on + strand, within GFF1575 at 176.149 kb on + strand, within GFF1575 at 176.149 kb on + strand, within GFF1575 at 176.149 kb on + strand, within GFF1575 at 176.150 kb on - strand, within GFF1575 at 176.150 kb on - strand, within GFF1575 at 176.606 kb on - strand at 176.606 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 174,018 - GFF1573 0.65 +0.8 174,018 - GFF1573 0.65 -0.8 174,681 - GFF1574 0.17 +0.0 174,860 + GFF1574 0.32 +0.5 174,861 - GFF1574 0.32 +0.2 174,890 + GFF1574 0.34 -0.6 174,902 + GFF1574 0.35 -0.5 174,978 - GFF1574 0.41 +0.1 174,978 - GFF1574 0.41 +0.0 174,978 - GFF1574 0.41 -0.3 175,208 + GFF1574 0.60 +0.2 175,208 + GFF1574 0.60 -0.3 175,208 + GFF1574 0.60 -0.6 175,208 + GFF1574 0.60 -0.7 175,208 + GFF1574 0.60 -0.3 175,209 - GFF1574 0.60 -0.2 175,209 - GFF1574 0.60 -0.4 175,209 - GFF1574 0.60 -1.1 175,209 - GFF1574 0.60 -0.9 175,283 + GFF1574 0.67 -1.2 176,149 + GFF1575 0.48 -0.1 176,149 + GFF1575 0.48 -0.0 176,149 + GFF1575 0.48 +0.4 176,149 + GFF1575 0.48 +0.3 176,150 - GFF1575 0.48 -1.0 176,150 - GFF1575 0.48 +1.1 176,606 - -0.2 176,606 - -0.5
Or see this region's nucleotide sequence