Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1535 and GFF1536 overlap by 4 nucleotides GFF1536 and GFF1537 are separated by 10 nucleotides GFF1537 and GFF1538 are separated by 3 nucleotides GFF1538 and GFF1539 are separated by 256 nucleotides
GFF1535 - Shikimate 5-dehydrogenase I alpha (EC 1.1.1.25), at 133,012 to 133,917
GFF1535
GFF1536 - BUG/TctC family periplasmic protein, at 133,914 to 134,897
GFF1536
GFF1537 - FIG01127817: hypothetical protein, at 134,908 to 136,569
GFF1537
GFF1538 - hypothetical protein, at 136,573 to 137,265
GFF1538
GFF1539 - RsbT co-antagonist protein RsbRA, at 137,522 to 138,367
GFF1539
Position (kb) 134
135
136
137 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 134.001 kb on + strand at 134.233 kb on - strand, within GFF1536 at 134.248 kb on - strand, within GFF1536 at 134.385 kb on + strand, within GFF1536 at 134.385 kb on + strand, within GFF1536 at 134.385 kb on + strand, within GFF1536 at 134.385 kb on + strand, within GFF1536 at 134.386 kb on - strand, within GFF1536 at 134.475 kb on + strand, within GFF1536 at 134.476 kb on - strand, within GFF1536 at 134.476 kb on - strand, within GFF1536 at 134.857 kb on - strand at 135.145 kb on + strand, within GFF1537 at 135.145 kb on + strand, within GFF1537 at 135.145 kb on + strand, within GFF1537 at 135.146 kb on - strand, within GFF1537 at 135.146 kb on - strand, within GFF1537 at 135.146 kb on - strand, within GFF1537 at 135.175 kb on + strand, within GFF1537 at 135.175 kb on + strand, within GFF1537 at 135.176 kb on - strand, within GFF1537 at 135.176 kb on - strand, within GFF1537 at 135.178 kb on + strand, within GFF1537 at 135.178 kb on + strand, within GFF1537 at 135.179 kb on - strand, within GFF1537 at 135.601 kb on + strand, within GFF1537 at 135.601 kb on + strand, within GFF1537 at 135.602 kb on - strand, within GFF1537 at 135.775 kb on + strand, within GFF1537 at 135.775 kb on + strand, within GFF1537 at 135.775 kb on + strand, within GFF1537 at 135.775 kb on + strand, within GFF1537 at 135.775 kb on + strand, within GFF1537 at 135.776 kb on - strand, within GFF1537 at 135.776 kb on - strand, within GFF1537 at 135.776 kb on - strand, within GFF1537 at 135.832 kb on + strand, within GFF1537 at 135.833 kb on - strand, within GFF1537 at 135.875 kb on - strand, within GFF1537 at 136.069 kb on + strand, within GFF1537 at 136.069 kb on + strand, within GFF1537 at 136.070 kb on - strand, within GFF1537 at 136.070 kb on - strand, within GFF1537 at 136.070 kb on - strand, within GFF1537 at 136.070 kb on - strand, within GFF1537 at 136.638 kb on - strand at 136.638 kb on - strand at 136.638 kb on - strand at 137.081 kb on + strand, within GFF1538 at 137.082 kb on - strand, within GFF1538 at 137.082 kb on - strand, within GFF1538 at 137.082 kb on - strand, within GFF1538 at 137.082 kb on - strand, within GFF1538 at 137.276 kb on + strand at 137.276 kb on + strand at 137.276 kb on + strand at 137.277 kb on - strand at 137.332 kb on - strand at 137.332 kb on - strand at 137.342 kb on + strand at 137.354 kb on + strand at 137.354 kb on + strand at 137.354 kb on + strand at 137.354 kb on + strand at 137.355 kb on - strand at 137.412 kb on + strand at 137.412 kb on + strand at 137.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 134,001 + +0.7 134,233 - GFF1536 0.32 +0.0 134,248 - GFF1536 0.34 -1.4 134,385 + GFF1536 0.48 -1.0 134,385 + GFF1536 0.48 -1.1 134,385 + GFF1536 0.48 -0.1 134,385 + GFF1536 0.48 -1.3 134,386 - GFF1536 0.48 -0.9 134,475 + GFF1536 0.57 -1.6 134,476 - GFF1536 0.57 -0.3 134,476 - GFF1536 0.57 -1.2 134,857 - -0.2 135,145 + GFF1537 0.14 -0.1 135,145 + GFF1537 0.14 -1.5 135,145 + GFF1537 0.14 +0.3 135,146 - GFF1537 0.14 +0.0 135,146 - GFF1537 0.14 -0.5 135,146 - GFF1537 0.14 -1.3 135,175 + GFF1537 0.16 -1.0 135,175 + GFF1537 0.16 -1.9 135,176 - GFF1537 0.16 -1.4 135,176 - GFF1537 0.16 -0.3 135,178 + GFF1537 0.16 -1.0 135,178 + GFF1537 0.16 -0.6 135,179 - GFF1537 0.16 -0.2 135,601 + GFF1537 0.42 +0.8 135,601 + GFF1537 0.42 -1.1 135,602 - GFF1537 0.42 +1.8 135,775 + GFF1537 0.52 -0.4 135,775 + GFF1537 0.52 -0.0 135,775 + GFF1537 0.52 -0.3 135,775 + GFF1537 0.52 -0.2 135,775 + GFF1537 0.52 +0.2 135,776 - GFF1537 0.52 +0.7 135,776 - GFF1537 0.52 -0.5 135,776 - GFF1537 0.52 -1.2 135,832 + GFF1537 0.56 +0.1 135,833 - GFF1537 0.56 -0.8 135,875 - GFF1537 0.58 +0.5 136,069 + GFF1537 0.70 -0.3 136,069 + GFF1537 0.70 -0.5 136,070 - GFF1537 0.70 +0.8 136,070 - GFF1537 0.70 -0.4 136,070 - GFF1537 0.70 -2.1 136,070 - GFF1537 0.70 +1.1 136,638 - -1.8 136,638 - +0.8 136,638 - +0.2 137,081 + GFF1538 0.73 -1.6 137,082 - GFF1538 0.73 -0.3 137,082 - GFF1538 0.73 -3.0 137,082 - GFF1538 0.73 +0.3 137,082 - GFF1538 0.73 -1.3 137,276 + -1.6 137,276 + -2.0 137,276 + -1.0 137,277 - +0.2 137,332 - -1.6 137,332 - -0.4 137,342 + -0.2 137,354 + -1.3 137,354 + +0.0 137,354 + -0.3 137,354 + +1.3 137,355 - +0.6 137,412 + -0.8 137,412 + -1.9 137,413 - -0.3
Or see this region's nucleotide sequence