Strain Fitness in Variovorax sp. SCN45 around GFF151

Experiment: phage_bap4

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntGFF149 and GFF151 are separated by 21 nucleotidesGFF151 and GFF152 are separated by 27 nucleotidesGFF152 and GFF153 overlap by 4 nucleotides GFF149 - Acyl-coenzyme A:6-aminopenicillanic-acid-acyltransferase 40 kDa form (EC 2.3.1.164), at 177,637 to 178,797 GFF149 GFF151 - FIG00460174: hypothetical protein, at 178,819 to 179,706 GFF151 GFF152 - ABC transporter, permease protein 1 (cluster 5, nickel/peptides/opines), at 179,734 to 180,678 GFF152 GFF153 - ABC transporter, permease protein 2 (cluster 5, nickel/peptides/opines), at 180,675 to 181,511 GFF153 Position (kb) 178 179 180Strain fitness (log2 ratio) -2 -1 0 1 2at 177.833 kb on - strand, within GFF149at 177.833 kb on - strand, within GFF149at 177.833 kb on - strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.844 kb on + strand, within GFF149at 177.938 kb on - strand, within GFF149at 178.071 kb on + strand, within GFF149at 178.071 kb on + strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.072 kb on - strand, within GFF149at 178.342 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.537 kb on + strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.538 kb on - strand, within GFF149at 178.762 kb on + strandat 178.763 kb on - strandat 178.763 kb on - strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.786 kb on + strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.787 kb on - strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.795 kb on + strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.796 kb on - strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.876 kb on + strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.877 kb on - strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.900 kb on + strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.901 kb on - strandat 178.930 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.939 kb on + strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.940 kb on - strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.977 kb on + strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 178.978 kb on - strand, within GFF151at 179.027 kb on - strand, within GFF151at 179.027 kb on - strand, within GFF151at 179.138 kb on + strand, within GFF151at 179.138 kb on + strand, within GFF151at 179.155 kb on + strand, within GFF151at 179.155 kb on + strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.156 kb on - strand, within GFF151at 179.236 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.491 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.494 kb on + strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.495 kb on - strand, within GFF151at 179.726 kb on + strandat 179.727 kb on - strandat 179.727 kb on - strandat 179.813 kb on + strandat 179.814 kb on - strandat 180.232 kb on + strand, within GFF152at 180.232 kb on + strand, within GFF152at 180.233 kb on - strand, within GFF152at 180.271 kb on + strand, within GFF152at 180.272 kb on - strand, within GFF152at 180.272 kb on - strand, within GFF152at 180.367 kb on + strand, within GFF152at 180.367 kb on + strand, within GFF152at 180.367 kb on + strand, within GFF152at 180.368 kb on - strand, within GFF152at 180.368 kb on - strand, within GFF152at 180.368 kb on - strand, within GFF152at 180.368 kb on - strand, within GFF152at 180.578 kb on + strand, within GFF152at 180.578 kb on + strand, within GFF152at 180.578 kb on + strand, within GFF152at 180.579 kb on - strand, within GFF152at 180.579 kb on - strand, within GFF152at 180.579 kb on - strand, within GFF152at 180.579 kb on - strand, within GFF152at 180.610 kb on + strandat 180.610 kb on + strandat 180.610 kb on + strandat 180.610 kb on + strandat 180.610 kb on + strandat 180.611 kb on - strandat 180.611 kb on - strandat 180.611 kb on - strandat 180.611 kb on - strandat 180.643 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
remove
177,833 - GFF149 0.17 -0.2
177,833 - GFF149 0.17 +0.6
177,833 - GFF149 0.17 -0.6
177,844 + GFF149 0.18 +0.0
177,844 + GFF149 0.18 -1.4
177,844 + GFF149 0.18 -0.4
177,844 + GFF149 0.18 -0.2
177,844 + GFF149 0.18 -0.5
177,938 - GFF149 0.26 +0.5
178,071 + GFF149 0.37 -1.3
178,071 + GFF149 0.37 +0.3
178,072 - GFF149 0.37 -0.2
178,072 - GFF149 0.37 +2.2
178,072 - GFF149 0.37 -0.1
178,342 + GFF149 0.61 +0.1
178,537 + GFF149 0.78 +0.9
178,537 + GFF149 0.78 -2.2
178,537 + GFF149 0.78 -0.3
178,538 - GFF149 0.78 -1.6
178,538 - GFF149 0.78 -0.5
178,538 - GFF149 0.78 -0.1
178,538 - GFF149 0.78 +0.4
178,538 - GFF149 0.78 -0.3
178,538 - GFF149 0.78 -0.2
178,762 + +0.6
178,763 - +0.2
178,763 - +0.2
178,786 + -1.9
178,786 + -0.8
178,786 + +0.2
178,786 + -0.4
178,787 - +0.1
178,787 - -0.6
178,787 - -0.1
178,787 - +0.3
178,787 - -0.2
178,795 + -0.7
178,795 + -0.6
178,795 + -1.0
178,795 + -0.3
178,795 + -0.5
178,796 - -0.8
178,796 - -0.4
178,796 - +0.2
178,796 - -0.1
178,796 - -1.0
178,796 - +1.0
178,876 + -1.4
178,876 + -0.1
178,876 + -1.0
178,876 + -1.2
178,876 + -1.6
178,876 + -1.1
178,876 + -0.2
178,876 + -0.3
178,877 - -0.4
178,877 - -0.5
178,877 - +0.0
178,877 - -0.6
178,877 - +0.1
178,900 + -0.4
178,900 + -2.6
178,900 + -0.8
178,900 + -0.1
178,900 + -0.2
178,900 + +0.0
178,900 + +0.2
178,901 - -0.4
178,901 - -1.5
178,901 - -0.9
178,901 - +0.6
178,930 + GFF151 0.12 -0.6
178,939 + GFF151 0.14 +0.0
178,939 + GFF151 0.14 +0.5
178,939 + GFF151 0.14 -1.9
178,939 + GFF151 0.14 -0.7
178,939 + GFF151 0.14 -0.8
178,939 + GFF151 0.14 -0.7
178,940 - GFF151 0.14 -1.0
178,940 - GFF151 0.14 -0.2
178,940 - GFF151 0.14 +0.3
178,940 - GFF151 0.14 -1.4
178,940 - GFF151 0.14 -0.4
178,940 - GFF151 0.14 -0.3
178,977 + GFF151 0.18 -0.3
178,977 + GFF151 0.18 -1.3
178,977 + GFF151 0.18 +0.9
178,977 + GFF151 0.18 -0.6
178,977 + GFF151 0.18 -0.9
178,977 + GFF151 0.18 -0.3
178,978 - GFF151 0.18 -0.8
178,978 - GFF151 0.18 -1.2
178,978 - GFF151 0.18 -0.4
178,978 - GFF151 0.18 -0.9
178,978 - GFF151 0.18 +1.6
178,978 - GFF151 0.18 -0.3
178,978 - GFF151 0.18 +0.1
179,027 - GFF151 0.23 -0.7
179,027 - GFF151 0.23 -0.7
179,138 + GFF151 0.36 -0.2
179,138 + GFF151 0.36 -0.4
179,155 + GFF151 0.38 -1.4
179,155 + GFF151 0.38 -0.1
179,156 - GFF151 0.38 -0.4
179,156 - GFF151 0.38 -0.6
179,156 - GFF151 0.38 -0.0
179,236 + GFF151 0.47 -2.4
179,491 + GFF151 0.76 -1.0
179,491 + GFF151 0.76 -0.4
179,491 + GFF151 0.76 -0.5
179,491 + GFF151 0.76 -0.4
179,491 + GFF151 0.76 +0.4
179,491 + GFF151 0.76 -0.4
179,491 + GFF151 0.76 +0.3
179,491 + GFF151 0.76 -2.3
179,491 + GFF151 0.76 -0.7
179,494 + GFF151 0.76 -0.8
179,494 + GFF151 0.76 +0.6
179,494 + GFF151 0.76 -1.2
179,494 + GFF151 0.76 +0.6
179,494 + GFF151 0.76 -0.5
179,494 + GFF151 0.76 -0.8
179,495 - GFF151 0.76 -1.3
179,495 - GFF151 0.76 -0.2
179,495 - GFF151 0.76 +0.0
179,495 - GFF151 0.76 -1.4
179,495 - GFF151 0.76 -0.2
179,495 - GFF151 0.76 +0.2
179,495 - GFF151 0.76 -0.2
179,726 + +0.0
179,727 - +0.1
179,727 - -0.5
179,813 + -1.2
179,814 - -0.7
180,232 + GFF152 0.53 -0.5
180,232 + GFF152 0.53 -0.3
180,233 - GFF152 0.53 +0.1
180,271 + GFF152 0.57 -0.8
180,272 - GFF152 0.57 +0.3
180,272 - GFF152 0.57 +2.6
180,367 + GFF152 0.67 -0.6
180,367 + GFF152 0.67 +0.2
180,367 + GFF152 0.67 -1.7
180,368 - GFF152 0.67 -0.3
180,368 - GFF152 0.67 -1.4
180,368 - GFF152 0.67 +0.3
180,368 - GFF152 0.67 -0.4
180,578 + GFF152 0.89 +1.3
180,578 + GFF152 0.89 +0.5
180,578 + GFF152 0.89 -0.5
180,579 - GFF152 0.89 -0.3
180,579 - GFF152 0.89 +0.3
180,579 - GFF152 0.89 -0.7
180,579 - GFF152 0.89 +0.3
180,610 + +0.5
180,610 + +1.6
180,610 + -0.2
180,610 + -0.9
180,610 + +0.2
180,611 - -1.3
180,611 - -0.2
180,611 - +0.3
180,611 - -0.4
180,643 + -0.3

Or see this region's nucleotide sequence