Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1489 and GFF1490 are separated by 3 nucleotides GFF1490 and GFF1491 are separated by 35 nucleotides GFF1491 and GFF1492 are separated by 1 nucleotides
GFF1489 - Tetrapartite efflux system, outer membrane factor lipoprotein FusA-like, at 81,910 to 83,373
GFF1489
GFF1490 - Transcriptional regulator, LysR family, at 83,377 to 84,273
GFF1490
GFF1491 - Gluconolactonase, at 84,309 to 85,241
GFF1491
GFF1492 - putative 2-pyrone-4,6-dicarboxylic acid hydrolase, at 85,243 to 86,142
GFF1492
Position (kb) 83
84
85 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 82.471 kb on + strand, within GFF1489 at 82.472 kb on - strand, within GFF1489 at 82.951 kb on + strand, within GFF1489 at 82.952 kb on - strand, within GFF1489 at 83.191 kb on + strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.192 kb on - strand, within GFF1489 at 83.371 kb on + strand at 83.887 kb on + strand, within GFF1490 at 83.950 kb on + strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 83.951 kb on - strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.007 kb on + strand, within GFF1490 at 84.008 kb on - strand, within GFF1490 at 84.102 kb on - strand, within GFF1490 at 84.102 kb on - strand, within GFF1490 at 84.187 kb on + strand at 84.187 kb on + strand at 84.188 kb on - strand at 84.188 kb on - strand at 84.310 kb on + strand at 84.310 kb on + strand at 84.311 kb on - strand at 84.437 kb on + strand, within GFF1491 at 84.511 kb on + strand, within GFF1491 at 84.676 kb on + strand, within GFF1491 at 84.676 kb on + strand, within GFF1491 at 84.676 kb on + strand, within GFF1491 at 84.676 kb on + strand, within GFF1491 at 84.820 kb on + strand, within GFF1491 at 84.944 kb on - strand, within GFF1491 at 84.944 kb on - strand, within GFF1491 at 84.944 kb on - strand, within GFF1491 at 85.003 kb on + strand, within GFF1491 at 85.062 kb on + strand, within GFF1491 at 85.062 kb on + strand, within GFF1491 at 85.063 kb on - strand, within GFF1491 at 85.063 kb on - strand, within GFF1491 at 85.063 kb on - strand, within GFF1491 at 85.075 kb on + strand, within GFF1491 at 85.237 kb on + strand at 85.238 kb on - strand at 85.238 kb on - strand at 85.238 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 82,471 + GFF1489 0.38 -0.1 82,472 - GFF1489 0.38 +1.6 82,951 + GFF1489 0.71 -0.4 82,952 - GFF1489 0.71 +0.8 83,191 + GFF1489 0.88 -0.4 83,192 - GFF1489 0.88 -0.4 83,192 - GFF1489 0.88 -0.1 83,192 - GFF1489 0.88 +0.2 83,192 - GFF1489 0.88 -0.9 83,192 - GFF1489 0.88 +0.2 83,371 + +1.3 83,887 + GFF1490 0.57 -0.5 83,950 + GFF1490 0.64 -0.3 83,951 - GFF1490 0.64 +0.8 83,951 - GFF1490 0.64 +0.5 83,951 - GFF1490 0.64 +0.7 84,007 + GFF1490 0.70 -0.0 84,007 + GFF1490 0.70 +0.8 84,007 + GFF1490 0.70 +1.0 84,008 - GFF1490 0.70 -1.8 84,102 - GFF1490 0.81 +0.0 84,102 - GFF1490 0.81 -0.3 84,187 + +0.1 84,187 + +0.3 84,188 - -0.1 84,188 - +0.4 84,310 + -1.5 84,310 + -0.5 84,311 - +0.3 84,437 + GFF1491 0.14 +0.1 84,511 + GFF1491 0.22 -0.1 84,676 + GFF1491 0.39 +0.1 84,676 + GFF1491 0.39 -0.5 84,676 + GFF1491 0.39 -0.1 84,676 + GFF1491 0.39 +0.9 84,820 + GFF1491 0.55 +0.2 84,944 - GFF1491 0.68 +1.0 84,944 - GFF1491 0.68 +0.1 84,944 - GFF1491 0.68 +0.4 85,003 + GFF1491 0.74 -0.2 85,062 + GFF1491 0.81 -0.9 85,062 + GFF1491 0.81 -1.2 85,063 - GFF1491 0.81 +0.4 85,063 - GFF1491 0.81 +0.8 85,063 - GFF1491 0.81 -0.5 85,075 + GFF1491 0.82 -0.5 85,237 + +0.3 85,238 - +2.8 85,238 - +1.2 85,238 - +1.6
Or see this region's nucleotide sequence