Strain Fitness in Variovorax sp. SCN45 around GFF1462

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1460 and GFF1461 are separated by 2 nucleotidesGFF1461 and GFF1462 overlap by 4 nucleotidesGFF1462 and GFF1463 are separated by 51 nucleotides GFF1460 - Enoyl-CoA hydratase/isomerase, at 51,846 to 52,592 GFF1460 GFF1461 - Enoyl-CoA hydratase (EC 4.2.1.17), at 52,595 to 53,401 GFF1461 GFF1462 - L-carnitine dehydratase/bile acid-inducible protein F, at 53,398 to 54,600 GFF1462 GFF1463 - Spermidine/putrescine import ABC transporter ATP-binding protein PotA (TC 3.A.1.11.1), at 54,652 to 55,713 GFF1463 Position (kb) 53 54 55Strain fitness (log2 ratio) -1 0 1 2 3at 52.405 kb on + strand, within GFF1460at 52.421 kb on - strand, within GFF1460at 52.421 kb on - strand, within GFF1460at 52.653 kb on + strandat 52.653 kb on + strandat 52.791 kb on + strand, within GFF1461at 52.792 kb on - strand, within GFF1461at 52.792 kb on - strand, within GFF1461at 52.792 kb on - strand, within GFF1461at 52.947 kb on + strand, within GFF1461at 52.948 kb on - strand, within GFF1461at 52.979 kb on + strand, within GFF1461at 53.130 kb on + strand, within GFF1461at 53.130 kb on + strand, within GFF1461at 53.131 kb on - strand, within GFF1461at 53.131 kb on - strand, within GFF1461at 53.131 kb on - strand, within GFF1461at 53.510 kb on + strandat 53.645 kb on + strand, within GFF1462at 53.777 kb on + strand, within GFF1462at 53.777 kb on + strand, within GFF1462at 53.778 kb on - strand, within GFF1462at 53.837 kb on + strand, within GFF1462at 53.837 kb on + strand, within GFF1462at 53.838 kb on - strand, within GFF1462at 53.838 kb on - strand, within GFF1462at 53.838 kb on - strand, within GFF1462at 53.838 kb on - strand, within GFF1462at 53.838 kb on - strand, within GFF1462at 53.932 kb on + strand, within GFF1462at 53.952 kb on - strand, within GFF1462at 54.270 kb on - strand, within GFF1462at 54.776 kb on + strand, within GFF1463at 54.797 kb on + strand, within GFF1463at 54.798 kb on - strand, within GFF1463at 55.037 kb on + strand, within GFF1463at 55.038 kb on - strand, within GFF1463at 55.038 kb on - strand, within GFF1463at 55.038 kb on - strand, within GFF1463at 55.451 kb on + strand, within GFF1463at 55.451 kb on + strand, within GFF1463at 55.451 kb on + strand, within GFF1463at 55.556 kb on - strand, within GFF1463

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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52,405 + GFF1460 0.75 -0.0
52,421 - GFF1460 0.77 -0.7
52,421 - GFF1460 0.77 +1.0
52,653 + +2.8
52,653 + -0.8
52,791 + GFF1461 0.24 -0.4
52,792 - GFF1461 0.24 +0.2
52,792 - GFF1461 0.24 -0.6
52,792 - GFF1461 0.24 -0.3
52,947 + GFF1461 0.44 -0.4
52,948 - GFF1461 0.44 -0.7
52,979 + GFF1461 0.48 +0.4
53,130 + GFF1461 0.66 -1.3
53,130 + GFF1461 0.66 -0.5
53,131 - GFF1461 0.66 -0.4
53,131 - GFF1461 0.66 -0.8
53,131 - GFF1461 0.66 +0.2
53,510 + -0.4
53,645 + GFF1462 0.21 +0.0
53,777 + GFF1462 0.32 +1.8
53,777 + GFF1462 0.32 -0.3
53,778 - GFF1462 0.32 +0.2
53,837 + GFF1462 0.36 -0.4
53,837 + GFF1462 0.36 -0.3
53,838 - GFF1462 0.37 +1.0
53,838 - GFF1462 0.37 +1.2
53,838 - GFF1462 0.37 +0.8
53,838 - GFF1462 0.37 +0.3
53,838 - GFF1462 0.37 +0.3
53,932 + GFF1462 0.44 -0.5
53,952 - GFF1462 0.46 -0.1
54,270 - GFF1462 0.72 -0.1
54,776 + GFF1463 0.12 -0.1
54,797 + GFF1463 0.14 +0.2
54,798 - GFF1463 0.14 +0.0
55,037 + GFF1463 0.36 +0.2
55,038 - GFF1463 0.36 -0.1
55,038 - GFF1463 0.36 -0.2
55,038 - GFF1463 0.36 -0.3
55,451 + GFF1463 0.75 -0.3
55,451 + GFF1463 0.75 -0.6
55,451 + GFF1463 0.75 -1.3
55,556 - GFF1463 0.85 +0.2

Or see this region's nucleotide sequence