Strain Fitness in Variovorax sp. SCN45 around GFF1436

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1435 and GFF1436 are separated by 52 nucleotidesGFF1436 and GFF1437 are separated by 163 nucleotides GFF1435 - BUG/TctC family periplasmic protein, at 25,579 to 26,580 GFF1435 GFF1436 - CaiB/BaiF family protein, at 26,633 to 27,841 GFF1436 GFF1437 - Transcriptional regulator, LysR family, at 28,005 to 28,901 GFF1437 Position (kb) 26 27 28Strain fitness (log2 ratio) -2 -1 0 1 2at 26.090 kb on + strand, within GFF1435at 26.091 kb on - strand, within GFF1435at 26.195 kb on + strand, within GFF1435at 26.195 kb on + strand, within GFF1435at 26.195 kb on + strand, within GFF1435at 26.195 kb on + strand, within GFF1435at 26.196 kb on - strand, within GFF1435at 26.196 kb on - strand, within GFF1435at 26.234 kb on + strand, within GFF1435at 26.249 kb on + strand, within GFF1435at 26.250 kb on - strand, within GFF1435at 26.770 kb on - strand, within GFF1436at 26.770 kb on - strand, within GFF1436at 27.123 kb on + strand, within GFF1436at 27.195 kb on + strand, within GFF1436at 27.195 kb on + strand, within GFF1436at 27.195 kb on + strand, within GFF1436at 27.196 kb on - strand, within GFF1436at 27.198 kb on + strand, within GFF1436at 27.198 kb on + strand, within GFF1436at 27.199 kb on - strand, within GFF1436at 27.225 kb on + strand, within GFF1436at 27.225 kb on + strand, within GFF1436at 27.226 kb on - strand, within GFF1436at 27.273 kb on + strand, within GFF1436at 27.273 kb on + strand, within GFF1436at 27.274 kb on - strand, within GFF1436at 27.303 kb on + strand, within GFF1436at 27.303 kb on + strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.304 kb on - strand, within GFF1436at 27.411 kb on + strand, within GFF1436at 27.412 kb on - strand, within GFF1436at 27.412 kb on - strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.465 kb on + strand, within GFF1436at 27.502 kb on - strand, within GFF1436at 27.651 kb on + strand, within GFF1436at 27.651 kb on + strand, within GFF1436at 27.651 kb on + strand, within GFF1436at 27.652 kb on - strand, within GFF1436at 27.652 kb on - strand, within GFF1436at 27.652 kb on - strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.658 kb on + strand, within GFF1436at 27.659 kb on - strand, within GFF1436at 27.659 kb on - strand, within GFF1436at 27.659 kb on - strand, within GFF1436at 27.729 kb on - strandat 27.955 kb on - strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.012 kb on + strandat 28.204 kb on - strand, within GFF1437at 28.204 kb on - strand, within GFF1437at 28.223 kb on - strand, within GFF1437at 28.494 kb on + strand, within GFF1437at 28.494 kb on + strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.495 kb on - strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.731 kb on + strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.732 kb on - strand, within GFF1437at 28.827 kb on + strandat 28.827 kb on + strandat 28.827 kb on + strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.828 kb on - strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.829 kb on + strandat 28.830 kb on - strandat 28.830 kb on - strandat 28.830 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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26,090 + GFF1435 0.51 -1.0
26,091 - GFF1435 0.51 -0.5
26,195 + GFF1435 0.61 +0.7
26,195 + GFF1435 0.61 +0.6
26,195 + GFF1435 0.61 +0.6
26,195 + GFF1435 0.61 -0.2
26,196 - GFF1435 0.62 -0.5
26,196 - GFF1435 0.62 -1.1
26,234 + GFF1435 0.65 -0.4
26,249 + GFF1435 0.67 -0.3
26,250 - GFF1435 0.67 +0.0
26,770 - GFF1436 0.11 -0.2
26,770 - GFF1436 0.11 -1.0
27,123 + GFF1436 0.41 -0.8
27,195 + GFF1436 0.46 -0.2
27,195 + GFF1436 0.46 -0.8
27,195 + GFF1436 0.46 +0.2
27,196 - GFF1436 0.47 -0.4
27,198 + GFF1436 0.47 -0.5
27,198 + GFF1436 0.47 -0.5
27,199 - GFF1436 0.47 -0.4
27,225 + GFF1436 0.49 +1.3
27,225 + GFF1436 0.49 +0.5
27,226 - GFF1436 0.49 -0.4
27,273 + GFF1436 0.53 +0.8
27,273 + GFF1436 0.53 -0.1
27,274 - GFF1436 0.53 -0.2
27,303 + GFF1436 0.55 +0.5
27,303 + GFF1436 0.55 -0.8
27,304 - GFF1436 0.56 +0.5
27,304 - GFF1436 0.56 +0.4
27,304 - GFF1436 0.56 -0.4
27,304 - GFF1436 0.56 +0.3
27,304 - GFF1436 0.56 +1.8
27,411 + GFF1436 0.64 +0.2
27,412 - GFF1436 0.64 +0.2
27,412 - GFF1436 0.64 +0.8
27,465 + GFF1436 0.69 +0.2
27,465 + GFF1436 0.69 +0.3
27,465 + GFF1436 0.69 +0.3
27,465 + GFF1436 0.69 -0.3
27,465 + GFF1436 0.69 +0.4
27,502 - GFF1436 0.72 -0.2
27,651 + GFF1436 0.84 +0.8
27,651 + GFF1436 0.84 -0.1
27,651 + GFF1436 0.84 -0.6
27,652 - GFF1436 0.84 -0.5
27,652 - GFF1436 0.84 +1.2
27,652 - GFF1436 0.84 +0.6
27,658 + GFF1436 0.85 +0.1
27,658 + GFF1436 0.85 +0.8
27,658 + GFF1436 0.85 -0.0
27,658 + GFF1436 0.85 +0.2
27,658 + GFF1436 0.85 +0.2
27,659 - GFF1436 0.85 -0.3
27,659 - GFF1436 0.85 +0.0
27,659 - GFF1436 0.85 -0.6
27,729 - +0.2
27,955 - +1.6
28,012 + -0.1
28,012 + -0.4
28,012 + -0.4
28,012 + +0.7
28,204 - GFF1437 0.22 -0.1
28,204 - GFF1437 0.22 -1.0
28,223 - GFF1437 0.24 +0.6
28,494 + GFF1437 0.55 -0.4
28,494 + GFF1437 0.55 +1.0
28,495 - GFF1437 0.55 -0.6
28,495 - GFF1437 0.55 -0.7
28,495 - GFF1437 0.55 -0.5
28,495 - GFF1437 0.55 -0.4
28,731 + GFF1437 0.81 +1.4
28,731 + GFF1437 0.81 -0.3
28,731 + GFF1437 0.81 -1.1
28,731 + GFF1437 0.81 -0.7
28,731 + GFF1437 0.81 -0.8
28,731 + GFF1437 0.81 +1.1
28,731 + GFF1437 0.81 +1.0
28,731 + GFF1437 0.81 -0.4
28,731 + GFF1437 0.81 -2.2
28,732 - GFF1437 0.81 -1.1
28,732 - GFF1437 0.81 +0.1
28,732 - GFF1437 0.81 +0.3
28,827 + +0.6
28,827 + +0.2
28,827 + +0.3
28,828 - -1.8
28,828 - -0.8
28,828 - -0.1
28,828 - +0.2
28,828 - -0.8
28,828 - -0.4
28,828 - -0.7
28,828 - -0.1
28,829 + -0.4
28,829 + -0.4
28,829 + +0.4
28,829 + -0.4
28,830 - +0.5
28,830 - +0.1
28,830 - +0.2

Or see this region's nucleotide sequence