Strain Fitness in Variovorax sp. SCN45 around GFF1325

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1324 and GFF1325 are separated by 5 nucleotidesGFF1325 and GFF1326 are separated by 63 nucleotidesGFF1326 and GFF1327 are separated by 139 nucleotides GFF1324 - Phosphoribosylformylglycinamidine synthase, synthetase subunit (EC 6.3.5.3) / Phosphoribosylformylglycinamidine synthase, glutamine amidotransferase subunit (EC 6.3.5.3), at 662,221 to 666,189 GFF1324 GFF1325 - no description, at 666,195 to 666,506 GFF1325 GFF1326 - Peptidyl-prolyl cis-trans isomerase (EC 5.2.1.8), at 666,570 to 667,355 GFF1326 GFF1327 - Cell division protein BolA, at 667,495 to 667,788 GFF1327 Position (kb) 666 667Strain fitness (log2 ratio) -2 -1 0 1 2at 665.486 kb on - strand, within GFF1324at 665.486 kb on - strand, within GFF1324at 665.599 kb on + strand, within GFF1324at 665.600 kb on - strand, within GFF1324at 665.999 kb on - strandat 665.999 kb on - strandat 666.346 kb on + strand, within GFF1325at 666.346 kb on + strand, within GFF1325at 666.347 kb on - strand, within GFF1325at 666.347 kb on - strand, within GFF1325at 666.347 kb on - strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.390 kb on + strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.391 kb on - strand, within GFF1325at 666.572 kb on - strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.607 kb on + strandat 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.955 kb on + strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.956 kb on - strand, within GFF1326at 666.991 kb on + strand, within GFF1326at 666.992 kb on - strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.036 kb on + strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.037 kb on - strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.096 kb on + strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.097 kb on - strand, within GFF1326at 667.364 kb on + strandat 667.365 kb on - strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.391 kb on + strandat 667.392 kb on - strandat 667.392 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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665,486 - GFF1324 0.82 -1.0
665,486 - GFF1324 0.82 -1.2
665,599 + GFF1324 0.85 -0.4
665,600 - GFF1324 0.85 +0.6
665,999 - +0.0
665,999 - -1.0
666,346 + GFF1325 0.48 +0.0
666,346 + GFF1325 0.48 +0.2
666,347 - GFF1325 0.49 -0.3
666,347 - GFF1325 0.49 +0.6
666,347 - GFF1325 0.49 -1.9
666,390 + GFF1325 0.62 +2.1
666,390 + GFF1325 0.62 +0.7
666,390 + GFF1325 0.62 +0.6
666,390 + GFF1325 0.62 +0.1
666,390 + GFF1325 0.62 -0.6
666,390 + GFF1325 0.62 +1.3
666,390 + GFF1325 0.62 -0.1
666,390 + GFF1325 0.62 -0.4
666,390 + GFF1325 0.62 -0.6
666,390 + GFF1325 0.62 -1.2
666,390 + GFF1325 0.62 +2.0
666,390 + GFF1325 0.62 +0.3
666,391 - GFF1325 0.63 -0.2
666,391 - GFF1325 0.63 +1.0
666,391 - GFF1325 0.63 -0.3
666,391 - GFF1325 0.63 +0.9
666,391 - GFF1325 0.63 +0.5
666,572 - -0.0
666,607 + -0.5
666,607 + -0.1
666,607 + -0.6
666,607 + -1.2
666,607 + -1.1
666,607 + -0.2
666,955 + GFF1326 0.49 +0.6
666,955 + GFF1326 0.49 -0.1
666,955 + GFF1326 0.49 -0.9
666,955 + GFF1326 0.49 +0.2
666,955 + GFF1326 0.49 -0.4
666,955 + GFF1326 0.49 +1.2
666,955 + GFF1326 0.49 +1.3
666,955 + GFF1326 0.49 -0.7
666,955 + GFF1326 0.49 -0.7
666,955 + GFF1326 0.49 -0.4
666,956 - GFF1326 0.49 +0.1
666,956 - GFF1326 0.49 -1.0
666,956 - GFF1326 0.49 -0.5
666,956 - GFF1326 0.49 -1.0
666,956 - GFF1326 0.49 -0.5
666,956 - GFF1326 0.49 +1.1
666,956 - GFF1326 0.49 -1.2
666,956 - GFF1326 0.49 -0.4
666,991 + GFF1326 0.54 -0.2
666,992 - GFF1326 0.54 +1.6
667,036 + GFF1326 0.59 -0.6
667,036 + GFF1326 0.59 -0.3
667,036 + GFF1326 0.59 -0.7
667,036 + GFF1326 0.59 -0.3
667,036 + GFF1326 0.59 +0.0
667,037 - GFF1326 0.59 +1.3
667,037 - GFF1326 0.59 +0.1
667,037 - GFF1326 0.59 -0.3
667,037 - GFF1326 0.59 -0.4
667,037 - GFF1326 0.59 -0.7
667,037 - GFF1326 0.59 -0.7
667,037 - GFF1326 0.59 -1.0
667,037 - GFF1326 0.59 -0.3
667,037 - GFF1326 0.59 -0.4
667,037 - GFF1326 0.59 -0.6
667,096 + GFF1326 0.67 -0.7
667,096 + GFF1326 0.67 +0.9
667,096 + GFF1326 0.67 -0.6
667,097 - GFF1326 0.67 -0.7
667,097 - GFF1326 0.67 +1.4
667,097 - GFF1326 0.67 -0.1
667,097 - GFF1326 0.67 +0.1
667,364 + -0.9
667,365 - -1.3
667,391 + -0.6
667,391 + +1.6
667,391 + -0.4
667,391 + -0.1
667,391 + +1.6
667,392 - +1.1
667,392 - -1.6

Or see this region's nucleotide sequence