Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1257 and GFF1259 are separated by 85 nucleotides GFF1259 and GFF1258 overlap by 2 nucleotides GFF1258 and GFF1260 overlap by 4 nucleotides GFF1260 and GFF1261 are separated by 647 nucleotides
GFF1257 - Organosulfonate utilization protein SsuF, at 575,442 to 575,657
GFF1257
GFF1259 - no description, at 575,743 to 575,880
GFF1259
GFF1258 - FIG00348129: hypothetical protein, at 575,879 to 576,604
GFF1258
GFF1260 - no description, at 576,601 to 577,167
GFF1260
GFF1261 - no description, at 577,815 to 578,378
GFF1261
Position (kb) 576
577
578 Strain fitness (log2 ratio) -1
0
1 at 575.745 kb on - strand at 575.838 kb on + strand, within GFF1259 at 575.838 kb on + strand, within GFF1259 at 575.839 kb on - strand, within GFF1259 at 576.095 kb on + strand, within GFF1258 at 576.095 kb on + strand, within GFF1258 at 576.096 kb on - strand, within GFF1258 at 576.096 kb on - strand, within GFF1258 at 576.152 kb on + strand, within GFF1258 at 576.152 kb on + strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.153 kb on - strand, within GFF1258 at 576.171 kb on - strand, within GFF1258 at 576.171 kb on - strand, within GFF1258 at 576.413 kb on - strand, within GFF1258 at 576.414 kb on + strand, within GFF1258 at 576.414 kb on + strand, within GFF1258 at 576.415 kb on - strand, within GFF1258 at 576.415 kb on - strand, within GFF1258 at 576.432 kb on + strand, within GFF1258 at 576.487 kb on - strand, within GFF1258 at 576.492 kb on + strand, within GFF1258 at 576.635 kb on + strand at 576.635 kb on + strand at 576.636 kb on - strand at 576.698 kb on - strand, within GFF1260 at 576.698 kb on - strand, within GFF1260 at 576.698 kb on - strand, within GFF1260 at 576.738 kb on + strand, within GFF1260 at 576.783 kb on - strand, within GFF1260 at 576.820 kb on - strand, within GFF1260 at 576.860 kb on + strand, within GFF1260 at 576.961 kb on + strand, within GFF1260 at 576.962 kb on - strand, within GFF1260 at 577.004 kb on - strand, within GFF1260 at 577.013 kb on - strand, within GFF1260 at 577.189 kb on + strand at 577.190 kb on - strand at 577.190 kb on - strand at 577.190 kb on - strand at 577.190 kb on - strand at 577.263 kb on + strand at 577.267 kb on - strand at 577.297 kb on + strand at 577.297 kb on + strand at 577.298 kb on - strand at 577.300 kb on + strand at 577.300 kb on + strand at 577.300 kb on + strand at 577.300 kb on + strand at 577.300 kb on + strand at 577.301 kb on - strand at 577.301 kb on - strand at 577.301 kb on - strand at 577.304 kb on + strand at 577.304 kb on + strand at 577.409 kb on + strand at 577.409 kb on + strand at 577.409 kb on + strand at 577.449 kb on - strand at 577.565 kb on + strand at 577.566 kb on - strand at 577.566 kb on - strand at 577.607 kb on + strand at 577.608 kb on - strand at 577.608 kb on - strand at 577.692 kb on + strand at 577.763 kb on - strand at 577.793 kb on + strand at 577.793 kb on + strand at 577.794 kb on - strand at 577.794 kb on - strand at 577.900 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 577.912 kb on - strand, within GFF1261 at 578.028 kb on + strand, within GFF1261 at 578.028 kb on + strand, within GFF1261 at 578.055 kb on + strand, within GFF1261 at 578.056 kb on - strand, within GFF1261 at 578.056 kb on - strand, within GFF1261 at 578.106 kb on - strand, within GFF1261 at 578.106 kb on - strand, within GFF1261
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 575,745 - -0.6 575,838 + GFF1259 0.69 +0.3 575,838 + GFF1259 0.69 -0.8 575,839 - GFF1259 0.70 -1.0 576,095 + GFF1258 0.30 -0.2 576,095 + GFF1258 0.30 +0.8 576,096 - GFF1258 0.30 +1.2 576,096 - GFF1258 0.30 -0.5 576,152 + GFF1258 0.38 +1.0 576,152 + GFF1258 0.38 -0.6 576,153 - GFF1258 0.38 -1.6 576,153 - GFF1258 0.38 +0.1 576,153 - GFF1258 0.38 +0.4 576,171 - GFF1258 0.40 -0.4 576,171 - GFF1258 0.40 -0.7 576,413 - GFF1258 0.74 -0.2 576,414 + GFF1258 0.74 -0.0 576,414 + GFF1258 0.74 -0.5 576,415 - GFF1258 0.74 -0.7 576,415 - GFF1258 0.74 -0.7 576,432 + GFF1258 0.76 +0.0 576,487 - GFF1258 0.84 -0.4 576,492 + GFF1258 0.84 +0.3 576,635 + +0.8 576,635 + -0.4 576,636 - -0.2 576,698 - GFF1260 0.17 -1.0 576,698 - GFF1260 0.17 -0.3 576,698 - GFF1260 0.17 -1.4 576,738 + GFF1260 0.24 -0.7 576,783 - GFF1260 0.32 -0.1 576,820 - GFF1260 0.39 +0.0 576,860 + GFF1260 0.46 -0.7 576,961 + GFF1260 0.63 +1.2 576,962 - GFF1260 0.64 -0.2 577,004 - GFF1260 0.71 -1.3 577,013 - GFF1260 0.73 -1.0 577,189 + -0.1 577,190 - +1.0 577,190 - +1.3 577,190 - +0.2 577,190 - -1.1 577,263 + -0.3 577,267 - +1.6 577,297 + -0.3 577,297 + -0.4 577,298 - -0.6 577,300 + -1.0 577,300 + -0.6 577,300 + -0.1 577,300 + +0.6 577,300 + -0.1 577,301 - +0.4 577,301 - -0.4 577,301 - -1.2 577,304 + +0.0 577,304 + -1.4 577,409 + +1.3 577,409 + -0.0 577,409 + +1.0 577,449 - -0.4 577,565 + -0.6 577,566 - -0.3 577,566 - -0.5 577,607 + -0.3 577,608 - -0.6 577,608 - +0.1 577,692 + +0.5 577,763 - +0.8 577,793 + +0.6 577,793 + -0.4 577,794 - -0.1 577,794 - -0.2 577,900 - GFF1261 0.15 +0.9 577,912 - GFF1261 0.17 +0.0 577,912 - GFF1261 0.17 -0.7 577,912 - GFF1261 0.17 -0.0 578,028 + GFF1261 0.38 -0.5 578,028 + GFF1261 0.38 -0.3 578,055 + GFF1261 0.43 -0.4 578,056 - GFF1261 0.43 -1.0 578,056 - GFF1261 0.43 -0.3 578,106 - GFF1261 0.52 +0.4 578,106 - GFF1261 0.52 +0.0
Or see this region's nucleotide sequence