Strain Fitness in Variovorax sp. SCN45 around GFF1223

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1222 and GFF1223 are separated by 192 nucleotidesGFF1223 and GFF1224 are separated by 15 nucleotides GFF1222 - Methylglyoxal synthase (EC 4.2.3.3), at 541,531 to 542,454 GFF1222 GFF1223 - Aldo/keto reductase, SMc04056 family, at 542,647 to 543,675 GFF1223 GFF1224 - Transcriptional regulator, LysR family, at 543,691 to 544,584 GFF1224 Position (kb) 542 543 544Strain fitness (log2 ratio) -2 -1 0 1at 542.090 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.124 kb on - strand, within GFF1222at 542.124 kb on - strand, within GFF1222at 542.124 kb on - strand, within GFF1222at 542.344 kb on + strand, within GFF1222at 542.345 kb on - strand, within GFF1222at 542.345 kb on - strand, within GFF1222at 542.489 kb on - strandat 542.489 kb on - strandat 542.640 kb on + strandat 542.640 kb on + strandat 542.640 kb on + strandat 542.640 kb on + strandat 542.640 kb on + strandat 542.641 kb on - strandat 542.641 kb on - strandat 542.641 kb on - strandat 542.641 kb on - strandat 542.653 kb on + strandat 542.828 kb on + strand, within GFF1223at 542.830 kb on + strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 543.010 kb on + strand, within GFF1223at 543.010 kb on + strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.110 kb on - strand, within GFF1223at 543.110 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.206 kb on - strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.209 kb on - strand, within GFF1223at 543.209 kb on - strand, within GFF1223at 543.229 kb on + strand, within GFF1223at 543.230 kb on - strand, within GFF1223at 543.623 kb on - strandat 543.628 kb on + strandat 543.773 kb on + strandat 543.773 kb on + strandat 543.773 kb on + strandat 543.773 kb on + strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.774 kb on - strandat 543.776 kb on + strandat 543.776 kb on + strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.777 kb on - strandat 543.917 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.947 kb on + strand, within GFF1224at 543.948 kb on - strand, within GFF1224at 543.948 kb on - strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.968 kb on + strand, within GFF1224at 543.969 kb on - strand, within GFF1224at 543.969 kb on - strand, within GFF1224at 544.081 kb on + strand, within GFF1224at 544.145 kb on + strand, within GFF1224at 544.145 kb on + strand, within GFF1224at 544.161 kb on - strand, within GFF1224at 544.253 kb on - strand, within GFF1224at 544.380 kb on - strand, within GFF1224at 544.380 kb on - strand, within GFF1224at 544.655 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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542,090 + GFF1222 0.60 -1.7
542,123 + GFF1222 0.64 -0.7
542,123 + GFF1222 0.64 -0.2
542,123 + GFF1222 0.64 -0.2
542,123 + GFF1222 0.64 -1.3
542,123 + GFF1222 0.64 +0.6
542,123 + GFF1222 0.64 -0.9
542,124 - GFF1222 0.64 -0.8
542,124 - GFF1222 0.64 +0.0
542,124 - GFF1222 0.64 -0.4
542,344 + GFF1222 0.88 -0.4
542,345 - GFF1222 0.88 -0.0
542,345 - GFF1222 0.88 -0.3
542,489 - -0.4
542,489 - -1.0
542,640 + +1.2
542,640 + -0.4
542,640 + +0.8
542,640 + -1.6
542,640 + -0.1
542,641 - -1.2
542,641 - +0.2
542,641 - +0.0
542,641 - +1.6
542,653 + +1.0
542,828 + GFF1223 0.18 +0.6
542,830 + GFF1223 0.18 +1.0
542,831 - GFF1223 0.18 -0.7
542,831 - GFF1223 0.18 -0.1
542,831 - GFF1223 0.18 -0.1
542,831 - GFF1223 0.18 -0.2
543,010 + GFF1223 0.35 +0.2
543,010 + GFF1223 0.35 -0.7
543,011 - GFF1223 0.35 -0.1
543,011 - GFF1223 0.35 +0.5
543,011 - GFF1223 0.35 -1.7
543,109 + GFF1223 0.45 -0.9
543,109 + GFF1223 0.45 +0.2
543,109 + GFF1223 0.45 -1.5
543,110 - GFF1223 0.45 +0.4
543,110 - GFF1223 0.45 -0.2
543,188 - GFF1223 0.53 -0.9
543,188 - GFF1223 0.53 +0.0
543,188 - GFF1223 0.53 +1.4
543,188 - GFF1223 0.53 -1.4
543,205 + GFF1223 0.54 -0.5
543,205 + GFF1223 0.54 -0.6
543,205 + GFF1223 0.54 -0.7
543,206 - GFF1223 0.54 +0.9
543,208 + GFF1223 0.55 +0.1
543,208 + GFF1223 0.55 -1.0
543,208 + GFF1223 0.55 +0.6
543,208 + GFF1223 0.55 -0.7
543,208 + GFF1223 0.55 -0.8
543,208 + GFF1223 0.55 -0.2
543,209 - GFF1223 0.55 -0.4
543,209 - GFF1223 0.55 +0.0
543,229 + GFF1223 0.57 +0.1
543,230 - GFF1223 0.57 -0.2
543,623 - -0.4
543,628 + -1.0
543,773 + +0.6
543,773 + +0.6
543,773 + -0.7
543,773 + -0.0
543,774 - -0.5
543,774 - -0.7
543,774 - -1.0
543,774 - -0.4
543,774 - -0.0
543,776 + +0.2
543,776 + +1.0
543,777 - -1.1
543,777 - -2.6
543,777 - +0.8
543,777 - +1.6
543,917 + GFF1224 0.25 -0.3
543,947 + GFF1224 0.29 -1.4
543,947 + GFF1224 0.29 +0.2
543,947 + GFF1224 0.29 +0.6
543,947 + GFF1224 0.29 +0.0
543,948 - GFF1224 0.29 -0.4
543,948 - GFF1224 0.29 -0.5
543,968 + GFF1224 0.31 -0.1
543,968 + GFF1224 0.31 -1.2
543,968 + GFF1224 0.31 -2.2
543,968 + GFF1224 0.31 -0.5
543,968 + GFF1224 0.31 -0.1
543,968 + GFF1224 0.31 +0.9
543,969 - GFF1224 0.31 +0.1
543,969 - GFF1224 0.31 -1.7
544,081 + GFF1224 0.44 +0.0
544,145 + GFF1224 0.51 +0.1
544,145 + GFF1224 0.51 -0.2
544,161 - GFF1224 0.53 -0.2
544,253 - GFF1224 0.63 -0.9
544,380 - GFF1224 0.77 +0.9
544,380 - GFF1224 0.77 -0.4
544,655 - -0.7

Or see this region's nucleotide sequence