Strain Fitness in Variovorax sp. SCN45 around GFF1222

Experiment: phage_bap4

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntGFF1219 and GFF1220 are separated by 73 nucleotidesGFF1220 and GFF1221 overlap by 23 nucleotidesGFF1221 and GFF1222 are separated by 9 nucleotidesGFF1222 and GFF1223 are separated by 192 nucleotides GFF1219 - SAM-dependent methyltransferase, at 539,669 to 540,541 GFF1219 GFF1220 - Transcriptional regulator, MerR family, at 540,615 to 541,091 GFF1220 GFF1221 - KEGG: putative acetyltransferase , at 541,069 to 541,521 GFF1221 GFF1222 - Methylglyoxal synthase (EC 4.2.3.3), at 541,531 to 542,454 GFF1222 GFF1223 - Aldo/keto reductase, SMc04056 family, at 542,647 to 543,675 GFF1223 Position (kb) 541 542 543Strain fitness (log2 ratio) -2 -1 0 1at 540.583 kb on - strandat 540.678 kb on + strand, within GFF1220at 540.678 kb on + strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.679 kb on - strand, within GFF1220at 540.681 kb on + strand, within GFF1220at 540.681 kb on + strand, within GFF1220at 540.682 kb on - strand, within GFF1220at 541.071 kb on - strandat 541.115 kb on + strand, within GFF1221at 541.116 kb on - strand, within GFF1221at 541.142 kb on + strand, within GFF1221at 541.143 kb on - strand, within GFF1221at 541.143 kb on - strand, within GFF1221at 541.157 kb on + strand, within GFF1221at 541.439 kb on + strand, within GFF1221at 541.439 kb on + strand, within GFF1221at 541.439 kb on + strand, within GFF1221at 541.440 kb on - strand, within GFF1221at 541.440 kb on - strand, within GFF1221at 541.454 kb on + strand, within GFF1221at 541.532 kb on + strandat 541.532 kb on + strandat 541.533 kb on - strandat 541.552 kb on - strandat 542.090 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.123 kb on + strand, within GFF1222at 542.124 kb on - strand, within GFF1222at 542.124 kb on - strand, within GFF1222at 542.124 kb on - strand, within GFF1222at 542.344 kb on + strand, within GFF1222at 542.345 kb on - strand, within GFF1222at 542.345 kb on - strand, within GFF1222at 542.489 kb on - strandat 542.489 kb on - strandat 542.640 kb on + strandat 542.640 kb on + strandat 542.640 kb on + strandat 542.640 kb on + strandat 542.640 kb on + strandat 542.641 kb on - strandat 542.641 kb on - strandat 542.641 kb on - strandat 542.641 kb on - strandat 542.653 kb on + strandat 542.828 kb on + strand, within GFF1223at 542.830 kb on + strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 542.831 kb on - strand, within GFF1223at 543.010 kb on + strand, within GFF1223at 543.010 kb on + strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.011 kb on - strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.109 kb on + strand, within GFF1223at 543.110 kb on - strand, within GFF1223at 543.110 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.188 kb on - strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.205 kb on + strand, within GFF1223at 543.206 kb on - strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.208 kb on + strand, within GFF1223at 543.209 kb on - strand, within GFF1223at 543.209 kb on - strand, within GFF1223at 543.229 kb on + strand, within GFF1223at 543.230 kb on - strand, within GFF1223

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Per-strain Table

Position Strand Gene LocusTag Fraction phage_bap4
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540,583 - -1.4
540,678 + GFF1220 0.13 +1.6
540,678 + GFF1220 0.13 +0.4
540,679 - GFF1220 0.13 -1.0
540,679 - GFF1220 0.13 -0.2
540,679 - GFF1220 0.13 -0.6
540,679 - GFF1220 0.13 -0.2
540,679 - GFF1220 0.13 -0.7
540,679 - GFF1220 0.13 -1.4
540,681 + GFF1220 0.14 +0.1
540,681 + GFF1220 0.14 -0.6
540,682 - GFF1220 0.14 -0.1
541,071 - -0.5
541,115 + GFF1221 0.10 +1.4
541,116 - GFF1221 0.10 +0.0
541,142 + GFF1221 0.16 +0.3
541,143 - GFF1221 0.16 +0.8
541,143 - GFF1221 0.16 +0.2
541,157 + GFF1221 0.19 -0.1
541,439 + GFF1221 0.82 +0.1
541,439 + GFF1221 0.82 +1.6
541,439 + GFF1221 0.82 +0.2
541,440 - GFF1221 0.82 -1.7
541,440 - GFF1221 0.82 -0.3
541,454 + GFF1221 0.85 -1.0
541,532 + -0.2
541,532 + +0.6
541,533 - -2.0
541,552 - +0.0
542,090 + GFF1222 0.60 -1.7
542,123 + GFF1222 0.64 -0.7
542,123 + GFF1222 0.64 -0.2
542,123 + GFF1222 0.64 -0.2
542,123 + GFF1222 0.64 -1.3
542,123 + GFF1222 0.64 +0.6
542,123 + GFF1222 0.64 -0.9
542,124 - GFF1222 0.64 -0.8
542,124 - GFF1222 0.64 +0.0
542,124 - GFF1222 0.64 -0.4
542,344 + GFF1222 0.88 -0.4
542,345 - GFF1222 0.88 -0.0
542,345 - GFF1222 0.88 -0.3
542,489 - -0.4
542,489 - -1.0
542,640 + +1.2
542,640 + -0.4
542,640 + +0.8
542,640 + -1.6
542,640 + -0.1
542,641 - -1.2
542,641 - +0.2
542,641 - +0.0
542,641 - +1.6
542,653 + +1.0
542,828 + GFF1223 0.18 +0.6
542,830 + GFF1223 0.18 +1.0
542,831 - GFF1223 0.18 -0.7
542,831 - GFF1223 0.18 -0.1
542,831 - GFF1223 0.18 -0.1
542,831 - GFF1223 0.18 -0.2
543,010 + GFF1223 0.35 +0.2
543,010 + GFF1223 0.35 -0.7
543,011 - GFF1223 0.35 -0.1
543,011 - GFF1223 0.35 +0.5
543,011 - GFF1223 0.35 -1.7
543,109 + GFF1223 0.45 -0.9
543,109 + GFF1223 0.45 +0.2
543,109 + GFF1223 0.45 -1.5
543,110 - GFF1223 0.45 +0.4
543,110 - GFF1223 0.45 -0.2
543,188 - GFF1223 0.53 -0.9
543,188 - GFF1223 0.53 +0.0
543,188 - GFF1223 0.53 +1.4
543,188 - GFF1223 0.53 -1.4
543,205 + GFF1223 0.54 -0.5
543,205 + GFF1223 0.54 -0.6
543,205 + GFF1223 0.54 -0.7
543,206 - GFF1223 0.54 +0.9
543,208 + GFF1223 0.55 +0.1
543,208 + GFF1223 0.55 -1.0
543,208 + GFF1223 0.55 +0.6
543,208 + GFF1223 0.55 -0.7
543,208 + GFF1223 0.55 -0.8
543,208 + GFF1223 0.55 -0.2
543,209 - GFF1223 0.55 -0.4
543,209 - GFF1223 0.55 +0.0
543,229 + GFF1223 0.57 +0.1
543,230 - GFF1223 0.57 -0.2

Or see this region's nucleotide sequence