Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1217 and GFF1218 are separated by 207 nucleotides GFF1218 and GFF1219 are separated by 166 nucleotides
GFF1217 - Transcriptional regulator RpiR in protein degradation cluster, at 537,139 to 538,140
GFF1217
GFF1218 - O-antigen acetylase, at 538,348 to 539,502
GFF1218
GFF1219 - SAM-dependent methyltransferase, at 539,669 to 540,541
GFF1219
Position (kb) 538
539
540 Strain fitness (log2 ratio) -2
-1
0
1
2 at 537.401 kb on + strand, within GFF1217 at 537.401 kb on + strand, within GFF1217 at 537.402 kb on - strand, within GFF1217 at 537.537 kb on - strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.710 kb on + strand, within GFF1217 at 537.711 kb on - strand, within GFF1217 at 537.711 kb on - strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.761 kb on + strand, within GFF1217 at 537.762 kb on - strand, within GFF1217 at 537.762 kb on - strand, within GFF1217 at 537.927 kb on - strand, within GFF1217 at 537.927 kb on - strand, within GFF1217 at 538.043 kb on + strand at 538.043 kb on + strand at 538.043 kb on + strand at 538.043 kb on + strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.044 kb on - strand at 538.193 kb on + strand at 538.243 kb on - strand at 538.243 kb on - strand at 538.311 kb on + strand at 538.311 kb on + strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.312 kb on - strand at 538.334 kb on + strand at 538.334 kb on + strand at 538.453 kb on + strand at 538.453 kb on + strand at 538.528 kb on + strand, within GFF1218 at 538.528 kb on + strand, within GFF1218 at 538.528 kb on + strand, within GFF1218 at 538.529 kb on - strand, within GFF1218 at 538.561 kb on + strand, within GFF1218 at 538.562 kb on - strand, within GFF1218 at 538.562 kb on - strand, within GFF1218 at 538.591 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.627 kb on + strand, within GFF1218 at 538.628 kb on - strand, within GFF1218 at 538.628 kb on - strand, within GFF1218 at 538.628 kb on - strand, within GFF1218 at 538.628 kb on - strand, within GFF1218 at 538.825 kb on + strand, within GFF1218 at 538.825 kb on + strand, within GFF1218 at 538.825 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.840 kb on + strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.841 kb on - strand, within GFF1218 at 538.870 kb on + strand, within GFF1218 at 538.870 kb on + strand, within GFF1218 at 538.870 kb on + strand, within GFF1218 at 538.870 kb on + strand, within GFF1218 at 538.871 kb on - strand, within GFF1218 at 538.871 kb on - strand, within GFF1218 at 538.928 kb on + strand, within GFF1218 at 538.929 kb on - strand, within GFF1218 at 538.929 kb on - strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.990 kb on + strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.991 kb on - strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 538.999 kb on + strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.000 kb on - strand, within GFF1218 at 539.001 kb on - strand, within GFF1218 at 539.131 kb on + strand, within GFF1218 at 539.131 kb on + strand, within GFF1218 at 539.131 kb on + strand, within GFF1218 at 539.132 kb on - strand, within GFF1218 at 539.132 kb on - strand, within GFF1218 at 539.132 kb on - strand, within GFF1218 at 539.287 kb on + strand, within GFF1218 at 539.287 kb on + strand, within GFF1218 at 539.287 kb on + strand, within GFF1218 at 539.287 kb on + strand, within GFF1218 at 539.287 kb on + strand, within GFF1218 at 539.287 kb on + strand, within GFF1218 at 539.288 kb on - strand, within GFF1218 at 539.288 kb on - strand, within GFF1218 at 539.288 kb on - strand, within GFF1218 at 539.296 kb on + strand, within GFF1218 at 539.296 kb on + strand, within GFF1218 at 539.296 kb on + strand, within GFF1218 at 539.296 kb on + strand, within GFF1218 at 539.296 kb on + strand, within GFF1218 at 539.296 kb on + strand, within GFF1218 at 539.296 kb on + strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.297 kb on - strand, within GFF1218 at 539.435 kb on - strand at 539.566 kb on - strand at 539.626 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.754 kb on + strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.755 kb on - strand at 539.853 kb on + strand, within GFF1219 at 539.853 kb on + strand, within GFF1219 at 539.854 kb on - strand, within GFF1219 at 539.854 kb on - strand, within GFF1219 at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.461 kb on + strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.462 kb on - strand at 540.463 kb on + strand at 540.463 kb on + strand at 540.464 kb on - strand at 540.464 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 537,401 + GFF1217 0.26 +0.8 537,401 + GFF1217 0.26 -0.0 537,402 - GFF1217 0.26 -0.8 537,537 - GFF1217 0.40 +0.6 537,710 + GFF1217 0.57 -0.4 537,710 + GFF1217 0.57 -1.2 537,710 + GFF1217 0.57 -0.1 537,710 + GFF1217 0.57 -0.5 537,711 - GFF1217 0.57 -0.0 537,711 - GFF1217 0.57 +1.2 537,761 + GFF1217 0.62 -0.4 537,761 + GFF1217 0.62 +0.5 537,761 + GFF1217 0.62 -1.1 537,762 - GFF1217 0.62 -0.6 537,762 - GFF1217 0.62 -0.2 537,927 - GFF1217 0.79 +0.5 537,927 - GFF1217 0.79 -0.6 538,043 + -1.7 538,043 + -1.4 538,043 + +0.6 538,043 + +0.0 538,044 - +0.0 538,044 - +0.4 538,044 - -0.1 538,044 - +0.9 538,044 - +0.9 538,044 - -0.2 538,193 + +0.1 538,243 - +0.6 538,243 - +0.1 538,311 + +2.0 538,311 + +0.0 538,312 - +0.3 538,312 - +0.2 538,312 - -0.2 538,312 - +1.4 538,312 - +0.9 538,334 + +0.0 538,334 + -2.1 538,453 + -0.8 538,453 + -0.6 538,528 + GFF1218 0.16 -0.4 538,528 + GFF1218 0.16 -1.2 538,528 + GFF1218 0.16 +0.2 538,529 - GFF1218 0.16 -0.4 538,561 + GFF1218 0.18 -0.8 538,562 - GFF1218 0.19 -1.1 538,562 - GFF1218 0.19 +0.6 538,591 + GFF1218 0.21 +0.2 538,627 + GFF1218 0.24 +0.5 538,627 + GFF1218 0.24 +0.0 538,627 + GFF1218 0.24 -0.6 538,627 + GFF1218 0.24 -0.7 538,627 + GFF1218 0.24 -0.6 538,628 - GFF1218 0.24 +0.9 538,628 - GFF1218 0.24 -1.2 538,628 - GFF1218 0.24 -1.2 538,628 - GFF1218 0.24 -0.5 538,825 + GFF1218 0.41 -0.3 538,825 + GFF1218 0.41 -0.0 538,825 + GFF1218 0.41 -0.7 538,840 + GFF1218 0.43 +0.4 538,840 + GFF1218 0.43 -0.7 538,840 + GFF1218 0.43 -0.0 538,840 + GFF1218 0.43 -0.6 538,840 + GFF1218 0.43 -0.4 538,840 + GFF1218 0.43 -1.6 538,840 + GFF1218 0.43 -1.2 538,840 + GFF1218 0.43 +1.0 538,841 - GFF1218 0.43 -0.6 538,841 - GFF1218 0.43 +0.2 538,841 - GFF1218 0.43 +0.2 538,841 - GFF1218 0.43 -2.5 538,841 - GFF1218 0.43 +0.5 538,841 - GFF1218 0.43 +0.3 538,870 + GFF1218 0.45 +0.8 538,870 + GFF1218 0.45 -0.3 538,870 + GFF1218 0.45 -0.4 538,870 + GFF1218 0.45 -0.4 538,871 - GFF1218 0.45 +0.6 538,871 - GFF1218 0.45 +0.0 538,928 + GFF1218 0.50 -2.4 538,929 - GFF1218 0.50 -0.6 538,929 - GFF1218 0.50 -0.3 538,990 + GFF1218 0.56 -0.7 538,990 + GFF1218 0.56 -0.4 538,990 + GFF1218 0.56 -0.5 538,990 + GFF1218 0.56 -0.3 538,990 + GFF1218 0.56 -0.6 538,990 + GFF1218 0.56 -0.5 538,990 + GFF1218 0.56 -0.7 538,990 + GFF1218 0.56 +2.6 538,991 - GFF1218 0.56 -0.9 538,991 - GFF1218 0.56 +0.2 538,991 - GFF1218 0.56 +0.6 538,991 - GFF1218 0.56 -0.8 538,991 - GFF1218 0.56 -0.4 538,999 + GFF1218 0.56 +0.0 538,999 + GFF1218 0.56 +0.2 538,999 + GFF1218 0.56 -0.5 538,999 + GFF1218 0.56 -1.5 538,999 + GFF1218 0.56 -1.8 538,999 + GFF1218 0.56 -0.5 538,999 + GFF1218 0.56 -0.6 538,999 + GFF1218 0.56 -0.6 538,999 + GFF1218 0.56 +0.3 538,999 + GFF1218 0.56 -0.0 538,999 + GFF1218 0.56 +0.0 538,999 + GFF1218 0.56 -0.2 538,999 + GFF1218 0.56 +0.0 538,999 + GFF1218 0.56 -1.0 538,999 + GFF1218 0.56 -0.7 539,000 - GFF1218 0.56 +0.6 539,000 - GFF1218 0.56 +0.4 539,000 - GFF1218 0.56 -0.7 539,000 - GFF1218 0.56 -1.2 539,000 - GFF1218 0.56 -0.4 539,000 - GFF1218 0.56 +0.0 539,000 - GFF1218 0.56 +0.4 539,001 - GFF1218 0.57 -0.9 539,131 + GFF1218 0.68 -0.0 539,131 + GFF1218 0.68 -0.3 539,131 + GFF1218 0.68 +1.0 539,132 - GFF1218 0.68 +0.0 539,132 - GFF1218 0.68 +1.2 539,132 - GFF1218 0.68 -0.2 539,287 + GFF1218 0.81 -2.3 539,287 + GFF1218 0.81 -0.6 539,287 + GFF1218 0.81 +0.3 539,287 + GFF1218 0.81 -0.7 539,287 + GFF1218 0.81 -0.1 539,287 + GFF1218 0.81 -0.7 539,288 - GFF1218 0.81 +0.2 539,288 - GFF1218 0.81 -0.2 539,288 - GFF1218 0.81 -0.2 539,296 + GFF1218 0.82 -1.4 539,296 + GFF1218 0.82 -0.3 539,296 + GFF1218 0.82 -0.8 539,296 + GFF1218 0.82 -1.8 539,296 + GFF1218 0.82 -0.6 539,296 + GFF1218 0.82 -0.5 539,296 + GFF1218 0.82 -2.2 539,297 - GFF1218 0.82 +0.0 539,297 - GFF1218 0.82 +1.0 539,297 - GFF1218 0.82 -0.3 539,297 - GFF1218 0.82 -0.5 539,297 - GFF1218 0.82 +0.4 539,297 - GFF1218 0.82 -1.2 539,297 - GFF1218 0.82 -0.6 539,297 - GFF1218 0.82 -0.8 539,297 - GFF1218 0.82 +0.1 539,297 - GFF1218 0.82 -1.2 539,297 - GFF1218 0.82 -0.1 539,435 - -0.4 539,566 - +0.8 539,626 + +0.5 539,754 + -0.4 539,754 + +0.3 539,754 + -0.4 539,754 + +1.6 539,754 + +1.3 539,754 + +0.2 539,754 + +0.3 539,754 + -0.5 539,754 + -1.3 539,754 + -0.1 539,754 + -0.1 539,754 + -0.1 539,755 - -0.7 539,755 - +0.4 539,755 - -0.4 539,755 - -1.0 539,755 - -0.2 539,755 - -0.1 539,755 - -2.1 539,755 - -0.1 539,755 - +0.2 539,755 - +1.1 539,755 - +0.9 539,755 - -0.1 539,755 - -0.9 539,853 + GFF1219 0.21 +0.9 539,853 + GFF1219 0.21 -2.0 539,854 - GFF1219 0.21 -0.2 539,854 - GFF1219 0.21 -1.5 540,461 + +0.2 540,461 + +1.0 540,461 + +0.3 540,461 + +0.1 540,461 + -0.9 540,461 + -0.9 540,461 + -0.4 540,461 + -0.2 540,461 + -0.5 540,461 + +0.4 540,461 + +0.4 540,461 + +1.0 540,462 - +0.3 540,462 - +1.2 540,462 - +0.9 540,462 - +0.6 540,462 - -0.3 540,462 - -1.2 540,462 - +0.5 540,462 - +0.1 540,462 - -0.6 540,462 - +0.3 540,462 - -0.3 540,462 - -0.5 540,462 - -0.3 540,462 - +0.3 540,462 - -1.3 540,462 - -0.3 540,462 - +0.3 540,462 - -1.0 540,462 - -0.6 540,463 + +0.5 540,463 + +0.6 540,464 - +0.6 540,464 - -0.5
Or see this region's nucleotide sequence