Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1186 and GFF1187 are separated by 5 nucleotides GFF1187 and GFF1188 overlap by 4 nucleotides GFF1188 and GFF1189 are separated by 21 nucleotides GFF1189 and GFF1190 overlap by 4 nucleotides
GFF1186 - Ferrichrome-iron receptor, at 502,629 to 504,782
GFF1186
GFF1187 - Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3), at 504,788 to 505,729
GFF1187
GFF1188 - Thiazole synthase (EC 2.8.1.10), at 505,726 to 506,541
GFF1188
GFF1189 - Sulfur carrier protein ThiS, at 506,563 to 506,760
GFF1189
GFF1190 - Glycine oxidase ThiO (EC 1.4.3.19), at 506,757 to 507,848
GFF1190
Position (kb) 505
506
507 Strain fitness (log2 ratio) -1
0
1
2 at 504.774 kb on + strand at 504.774 kb on + strand at 504.774 kb on + strand at 504.975 kb on + strand, within GFF1187 at 505.035 kb on + strand, within GFF1187 at 505.037 kb on + strand, within GFF1187 at 505.038 kb on - strand, within GFF1187 at 505.038 kb on - strand, within GFF1187 at 505.038 kb on - strand, within GFF1187 at 505.038 kb on - strand, within GFF1187 at 505.056 kb on + strand, within GFF1187 at 505.056 kb on + strand, within GFF1187 at 505.056 kb on + strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.057 kb on - strand, within GFF1187 at 505.096 kb on - strand, within GFF1187 at 505.096 kb on - strand, within GFF1187 at 505.197 kb on + strand, within GFF1187 at 505.240 kb on - strand, within GFF1187 at 505.392 kb on + strand, within GFF1187 at 505.392 kb on + strand, within GFF1187 at 505.393 kb on - strand, within GFF1187 at 505.602 kb on + strand, within GFF1187 at 505.602 kb on + strand, within GFF1187 at 505.603 kb on - strand, within GFF1187 at 506.118 kb on - strand, within GFF1188 at 506.118 kb on - strand, within GFF1188 at 506.118 kb on - strand, within GFF1188 at 506.118 kb on - strand, within GFF1188 at 506.196 kb on - strand, within GFF1188 at 506.196 kb on - strand, within GFF1188 at 506.196 kb on - strand, within GFF1188 at 506.628 kb on - strand, within GFF1189 at 506.998 kb on + strand, within GFF1190 at 506.999 kb on - strand, within GFF1190 at 506.999 kb on - strand, within GFF1190 at 506.999 kb on - strand, within GFF1190 at 506.999 kb on - strand, within GFF1190 at 507.109 kb on + strand, within GFF1190 at 507.109 kb on + strand, within GFF1190 at 507.110 kb on - strand, within GFF1190
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 504,774 + +0.0 504,774 + -0.1 504,774 + +0.1 504,975 + GFF1187 0.20 -0.5 505,035 + GFF1187 0.26 +0.2 505,037 + GFF1187 0.26 -0.6 505,038 - GFF1187 0.27 +0.5 505,038 - GFF1187 0.27 +0.0 505,038 - GFF1187 0.27 -0.4 505,038 - GFF1187 0.27 -0.9 505,056 + GFF1187 0.28 +0.8 505,056 + GFF1187 0.28 -0.4 505,056 + GFF1187 0.28 +1.0 505,057 - GFF1187 0.29 +0.0 505,057 - GFF1187 0.29 +0.4 505,057 - GFF1187 0.29 -0.1 505,057 - GFF1187 0.29 -0.6 505,057 - GFF1187 0.29 -0.0 505,057 - GFF1187 0.29 +0.1 505,057 - GFF1187 0.29 -0.2 505,057 - GFF1187 0.29 -0.6 505,096 - GFF1187 0.33 +0.4 505,096 - GFF1187 0.33 -0.3 505,197 + GFF1187 0.43 +0.5 505,240 - GFF1187 0.48 -0.7 505,392 + GFF1187 0.64 +0.0 505,392 + GFF1187 0.64 +0.5 505,393 - GFF1187 0.64 -0.8 505,602 + GFF1187 0.86 -1.1 505,602 + GFF1187 0.86 -0.4 505,603 - GFF1187 0.87 -1.2 506,118 - GFF1188 0.48 +0.8 506,118 - GFF1188 0.48 +0.8 506,118 - GFF1188 0.48 -0.6 506,118 - GFF1188 0.48 +0.2 506,196 - GFF1188 0.58 +0.2 506,196 - GFF1188 0.58 +2.2 506,196 - GFF1188 0.58 +0.0 506,628 - GFF1189 0.33 -0.2 506,998 + GFF1190 0.22 -1.3 506,999 - GFF1190 0.22 -0.3 506,999 - GFF1190 0.22 -0.1 506,999 - GFF1190 0.22 +0.6 506,999 - GFF1190 0.22 -0.2 507,109 + GFF1190 0.32 +0.9 507,109 + GFF1190 0.32 +0.4 507,110 - GFF1190 0.32 -1.5
Or see this region's nucleotide sequence