Experiment: phage_bap4
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt GFF1050 and GFF1051 are separated by 15 nucleotides GFF1051 and GFF1052 overlap by 4 nucleotides GFF1052 and GFF1053 are separated by 118 nucleotides GFF1053 and GFF1054 are separated by 137 nucleotides
GFF1050 - Transcriptional regulator, LysR family, at 365,929 to 366,780
GFF1050
GFF1051 - no description, at 366,796 to 366,921
GFF1051
GFF1052 - hypothetical protein, at 366,918 to 367,490
GFF1052
GFF1053 - no description, at 367,609 to 368,298
GFF1053
GFF1054 - Catechol 2,3-dioxygenase (EC 1.13.11.2), at 368,436 to 369,419
GFF1054
Position (kb) 367
368
369 Strain fitness (log2 ratio) -2
-1
0
1
2 at 366.797 kb on + strand at 366.798 kb on - strand at 366.841 kb on + strand, within GFF1051 at 366.842 kb on - strand, within GFF1051 at 366.910 kb on + strand at 366.910 kb on + strand at 366.910 kb on + strand at 366.910 kb on + strand at 366.910 kb on + strand at 366.911 kb on - strand at 366.911 kb on - strand at 366.911 kb on - strand at 366.911 kb on - strand at 366.952 kb on + strand at 366.952 kb on + strand at 366.952 kb on + strand at 366.952 kb on + strand at 366.952 kb on + strand at 366.952 kb on + strand at 366.953 kb on - strand at 366.953 kb on - strand at 366.953 kb on - strand at 366.953 kb on - strand at 366.964 kb on + strand at 366.964 kb on + strand at 366.965 kb on - strand at 366.965 kb on - strand at 366.965 kb on - strand at 367.159 kb on + strand, within GFF1052 at 367.159 kb on + strand, within GFF1052 at 367.312 kb on + strand, within GFF1052 at 367.313 kb on - strand, within GFF1052 at 367.313 kb on - strand, within GFF1052 at 367.313 kb on - strand, within GFF1052 at 367.324 kb on + strand, within GFF1052 at 367.324 kb on + strand, within GFF1052 at 367.324 kb on + strand, within GFF1052 at 367.324 kb on + strand, within GFF1052 at 367.324 kb on + strand, within GFF1052 at 367.324 kb on + strand, within GFF1052 at 367.324 kb on + strand, within GFF1052 at 367.324 kb on + strand, within GFF1052 at 367.325 kb on - strand, within GFF1052 at 367.325 kb on - strand, within GFF1052 at 367.325 kb on - strand, within GFF1052 at 367.325 kb on - strand, within GFF1052 at 367.450 kb on + strand at 367.450 kb on + strand at 367.450 kb on + strand at 367.474 kb on + strand at 367.474 kb on + strand at 367.475 kb on - strand at 367.475 kb on - strand at 367.475 kb on - strand at 367.475 kb on - strand at 367.566 kb on - strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.567 kb on + strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.568 kb on - strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.610 kb on + strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.611 kb on - strand at 367.793 kb on + strand, within GFF1053 at 367.811 kb on + strand, within GFF1053 at 367.811 kb on + strand, within GFF1053 at 367.811 kb on + strand, within GFF1053 at 367.812 kb on - strand, within GFF1053 at 367.812 kb on - strand, within GFF1053 at 367.812 kb on - strand, within GFF1053 at 367.812 kb on - strand, within GFF1053 at 368.029 kb on + strand, within GFF1053 at 368.029 kb on + strand, within GFF1053 at 368.029 kb on + strand, within GFF1053 at 368.257 kb on + strand at 368.257 kb on + strand at 368.257 kb on + strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.258 kb on - strand at 368.334 kb on + strand at 368.334 kb on + strand at 368.334 kb on + strand at 368.334 kb on + strand at 368.335 kb on - strand at 368.335 kb on - strand at 368.335 kb on - strand at 368.357 kb on + strand at 368.553 kb on + strand, within GFF1054 at 368.553 kb on + strand, within GFF1054 at 368.553 kb on + strand, within GFF1054 at 368.553 kb on + strand, within GFF1054 at 368.553 kb on + strand, within GFF1054 at 368.554 kb on - strand, within GFF1054 at 368.554 kb on - strand, within GFF1054 at 368.554 kb on - strand, within GFF1054 at 368.604 kb on + strand, within GFF1054 at 368.604 kb on + strand, within GFF1054 at 368.604 kb on + strand, within GFF1054 at 368.605 kb on - strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.670 kb on + strand, within GFF1054 at 368.671 kb on - strand, within GFF1054 at 368.671 kb on - strand, within GFF1054 at 368.671 kb on - strand, within GFF1054 at 368.914 kb on + strand, within GFF1054 at 368.988 kb on + strand, within GFF1054 at 368.988 kb on + strand, within GFF1054 at 368.989 kb on - strand, within GFF1054 at 369.228 kb on + strand, within GFF1054 at 369.228 kb on + strand, within GFF1054 at 369.228 kb on + strand, within GFF1054 at 369.229 kb on - strand, within GFF1054 at 369.237 kb on + strand, within GFF1054 at 369.237 kb on + strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.238 kb on - strand, within GFF1054 at 369.261 kb on + strand, within GFF1054 at 369.261 kb on + strand, within GFF1054 at 369.261 kb on + strand, within GFF1054 at 369.262 kb on - strand, within GFF1054 at 369.262 kb on - strand, within GFF1054 at 369.270 kb on + strand, within GFF1054 at 369.270 kb on + strand, within GFF1054 at 369.271 kb on - strand, within GFF1054 at 369.271 kb on - strand, within GFF1054 at 369.271 kb on - strand, within GFF1054
Per-strain Table
Position Strand Gene LocusTag Fraction phage_bap4 remove 366,797 + -1.1 366,798 - -0.5 366,841 + GFF1051 0.36 -0.3 366,842 - GFF1051 0.37 +0.4 366,910 + +0.2 366,910 + +0.9 366,910 + -0.2 366,910 + +1.1 366,910 + -0.3 366,911 - +0.3 366,911 - -1.7 366,911 - -1.0 366,911 - -0.7 366,952 + -0.4 366,952 + -0.1 366,952 + +0.1 366,952 + -0.8 366,952 + -2.6 366,952 + +0.1 366,953 - +0.5 366,953 - +0.5 366,953 - +1.0 366,953 - +1.6 366,964 + +0.2 366,964 + -0.5 366,965 - -0.4 366,965 - +0.5 366,965 - -0.2 367,159 + GFF1052 0.42 -1.6 367,159 + GFF1052 0.42 -0.6 367,312 + GFF1052 0.69 +0.4 367,313 - GFF1052 0.69 -0.6 367,313 - GFF1052 0.69 -1.6 367,313 - GFF1052 0.69 +2.1 367,324 + GFF1052 0.71 +0.9 367,324 + GFF1052 0.71 -0.1 367,324 + GFF1052 0.71 -0.5 367,324 + GFF1052 0.71 -0.7 367,324 + GFF1052 0.71 +1.4 367,324 + GFF1052 0.71 -1.5 367,324 + GFF1052 0.71 +1.1 367,324 + GFF1052 0.71 -0.2 367,325 - GFF1052 0.71 -1.1 367,325 - GFF1052 0.71 +0.1 367,325 - GFF1052 0.71 +0.6 367,325 - GFF1052 0.71 +0.2 367,450 + -0.1 367,450 + +0.9 367,450 + -0.8 367,474 + +0.1 367,474 + +0.4 367,475 - +0.8 367,475 - -0.7 367,475 - -0.4 367,475 - -1.7 367,566 - +0.1 367,567 + -0.4 367,567 + -0.4 367,567 + -0.1 367,567 + -0.6 367,567 + +1.2 367,567 + +0.3 367,567 + -0.1 367,567 + +0.1 367,567 + -0.2 367,567 + -1.4 367,567 + -0.0 367,567 + -0.5 367,567 + -0.1 367,567 + -0.7 367,567 + -0.6 367,567 + -0.3 367,567 + +0.4 367,568 - +0.7 367,568 - +0.3 367,568 - -0.2 367,568 - -0.4 367,568 - +0.6 367,568 - +0.6 367,568 - -0.8 367,568 - -0.5 367,568 - -0.7 367,568 - -0.0 367,568 - +0.1 367,568 - +1.0 367,568 - -0.2 367,568 - -0.6 367,610 + -0.7 367,610 + -0.1 367,610 + +1.1 367,610 + -0.1 367,610 + -1.2 367,610 + +0.6 367,610 + +0.2 367,610 + -0.1 367,611 - +0.0 367,611 - +0.2 367,611 - -0.9 367,611 - +0.0 367,611 - -0.6 367,611 - -0.2 367,611 - -0.8 367,611 - +0.2 367,611 - -0.3 367,611 - +0.8 367,793 + GFF1053 0.27 +0.4 367,811 + GFF1053 0.29 -0.9 367,811 + GFF1053 0.29 -0.9 367,811 + GFF1053 0.29 -0.4 367,812 - GFF1053 0.29 +0.4 367,812 - GFF1053 0.29 +0.0 367,812 - GFF1053 0.29 -1.1 367,812 - GFF1053 0.29 -0.5 368,029 + GFF1053 0.61 +0.4 368,029 + GFF1053 0.61 -0.7 368,029 + GFF1053 0.61 -0.6 368,257 + -1.5 368,257 + -0.5 368,257 + +2.2 368,258 - -0.8 368,258 - +0.4 368,258 - -0.7 368,258 - -0.2 368,258 - +1.2 368,258 - +0.3 368,258 - -1.4 368,334 + -0.2 368,334 + +0.6 368,334 + -0.4 368,334 + +0.6 368,335 - +0.3 368,335 - -0.7 368,335 - +0.6 368,357 + -0.0 368,553 + GFF1054 0.12 +0.4 368,553 + GFF1054 0.12 +0.1 368,553 + GFF1054 0.12 -0.1 368,553 + GFF1054 0.12 +0.2 368,553 + GFF1054 0.12 -0.5 368,554 - GFF1054 0.12 -0.4 368,554 - GFF1054 0.12 -0.6 368,554 - GFF1054 0.12 +0.1 368,604 + GFF1054 0.17 +0.3 368,604 + GFF1054 0.17 +0.2 368,604 + GFF1054 0.17 -0.4 368,605 - GFF1054 0.17 +0.8 368,670 + GFF1054 0.24 -0.9 368,670 + GFF1054 0.24 +0.3 368,670 + GFF1054 0.24 +0.2 368,670 + GFF1054 0.24 +0.6 368,670 + GFF1054 0.24 +0.0 368,671 - GFF1054 0.24 -1.5 368,671 - GFF1054 0.24 +0.8 368,671 - GFF1054 0.24 -0.3 368,914 + GFF1054 0.49 +1.2 368,988 + GFF1054 0.56 -0.4 368,988 + GFF1054 0.56 -1.8 368,989 - GFF1054 0.56 +0.4 369,228 + GFF1054 0.80 +0.3 369,228 + GFF1054 0.80 -0.5 369,228 + GFF1054 0.80 -0.4 369,229 - GFF1054 0.81 +0.1 369,237 + GFF1054 0.81 +0.4 369,237 + GFF1054 0.81 +0.1 369,238 - GFF1054 0.82 -0.5 369,238 - GFF1054 0.82 +0.6 369,238 - GFF1054 0.82 -0.1 369,238 - GFF1054 0.82 -0.1 369,238 - GFF1054 0.82 +0.1 369,238 - GFF1054 0.82 -0.4 369,238 - GFF1054 0.82 +0.3 369,261 + GFF1054 0.84 +0.2 369,261 + GFF1054 0.84 -0.1 369,261 + GFF1054 0.84 +0.4 369,262 - GFF1054 0.84 -1.2 369,262 - GFF1054 0.84 -0.7 369,270 + GFF1054 0.85 -0.5 369,270 + GFF1054 0.85 -0.1 369,271 - GFF1054 0.85 -0.2 369,271 - GFF1054 0.85 -0.0 369,271 - GFF1054 0.85 +1.4
Or see this region's nucleotide sequence